A bulk-surface mechanobiochemical modelling approach for single cell migration in two-space dimensions

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-10-16 DOI:10.1016/j.jtbi.2024.111966
David Hernandez-Aristizabal , Diego-Alexander Garzon-Alvarado , Carlos-Alberto Duque-Daza , Anotida Madzvamuse
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Abstract

In this work, we present a mechanobiochemical model for two-dimensional cell migration which couples mechanical properties of the cell cytosol with biochemical processes taking place near or on the cell plasma membrane. The modelling approach is based on a recently developed mathematical formalism of evolving bulk-surface partial differential equations of reaction–diffusion type. We solve these equations using finite element methods within a moving-mesh framework derived from the weak formulation of the evolving bulk-surface PDEs. In the present work, the cell cytosol interior (bulk) dynamics are coupled to the cell membrane (surface) dynamics through non-homogeneous Dirichlet boundary conditions. The modelling approach exhibits both directed cell migration in response to chemical cues as well as spontaneous migration in the absence of such cues. As a by-product, the approach shows fundamental characteristics associated with single cell migration such as: (i) cytosolic and membrane polarisation, (ii) actin dependent protrusions, and (iii) continuous shape deformation of the cell during migration.
Cell migration is an ubiquitous process in life that is mainly triggered by the dynamics of the actin cytoskeleton and therefore is driven by both mechanical and biochemical processes. It is a multistep process essential for mammalian organisms and is closely linked to a vast diversity of processes; from embryonic development to cancer invasion. Experimental, theoretical and computational studies have been key to elucidate the mechanisms underlying cell migration. On one hand, rapid advances in experimental techniques allow for detailed experimental measurements of cell migration pathways, while, on the other, computational approaches allow for the modelling, analysis and understanding of such observations. The bulk-surface mechanobiochemical modelling approach presented in this work, set premises to study single cell migration through complex non-isotropic environments in two- and three-space dimensions.
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二维空间中单细胞迁移的体表机械生物化学建模方法。
在这项研究中,我们提出了一种二维细胞迁移的机械生物化学模型,该模型将细胞胞体的机械特性与发生在细胞质膜附近或细胞质膜上的生化过程结合起来。建模方法基于最近开发的反应-扩散型体表偏微分方程演化数学形式。我们使用有限元方法,在由不断演化的体表偏微分方程的弱公式推导出的移动网格框架内求解这些方程。在本研究中,细胞胞体内部(体)动力学与细胞膜(表面)动力学通过非均质 Dirichlet 边界条件耦合在一起。这种建模方法既显示了细胞在化学线索作用下的定向迁移,也显示了细胞在无化学线索作用下的自发迁移。作为副产品,该方法显示了与单细胞迁移相关的基本特征,例如(i) 细胞质和细胞膜极化,(ii) 依靠肌动蛋白的突起,以及 (iii) 迁移过程中细胞形状的持续变形。细胞迁移是生命中无处不在的过程,主要由肌动蛋白细胞骨架的动态触发,因此由机械和生化过程共同驱动。它是哺乳动物生物体必不可少的一个多步骤过程,与从胚胎发育到癌症侵袭等多种过程密切相关。实验、理论和计算研究是阐明细胞迁移机制的关键。一方面,实验技术的飞速发展使我们能够对细胞迁移途径进行详细的实验测量;另一方面,计算方法使我们能够对这些观察结果进行建模、分析和理解。本研究提出的体表机械生物化学建模方法,为研究单细胞在二维和三维复杂的非各向同性环境中的迁移提供了前提条件。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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