Multiomics Profiling of Plasma Reveals Molecular Alterations Prior to a Diagnosis with Stroke Among Chinese Hypertension Patients.

IF 3.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Journal of Proteome Research Pub Date : 2024-12-06 Epub Date: 2024-10-28 DOI:10.1021/acs.jproteome.4c00559
Jingjing Zeng, Changyi Wang, Jiamin Guo, Tian Zhao, Han Wang, Ruijie Zhang, Liyuan Pu, Huiqun Yang, Jie Liang, Liyuan Han, Lei Li
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Abstract

We aimed to investigate the correlation between plasma proteins and metabolites and the occurrence of future strokes using mass spectrometry and bioinformatics as well as to identify other biomarkers that could predict stroke risk in hypertensive patients. In a nested case-control study, baseline plasma samples were collected from 50 hypertensive subjects who developed stroke and 50 gender-, age- and body mass index-matched controls. Plasma untargeted metabolomics and data independent acquisition-based proteomics analysis were performed in hypertensive patients, and 19 metabolites and 111 proteins were found to be differentially expressed. Integrative analyses revealed that molecular changes in plasma indicated dysregulation of protein digestion and absorption, salivary secretion, and regulation of actin cytoskeleton, along with significant metabolic suppression. C4BPA, Caprolactam, Col15A1, and HBB were identified as predictors of stroke occurrence, and the Support Vector Machines (SVM) model was determined to be the optimal predictive model by integrating six machine-learning classification models. The SVM model showed strong performance in both the internal validation set (area under the curve [AUC]: 0.977, 95% confidence interval [CI]: 0.941-1.000) and the external independent validation set (AUC: 0.973, 95% CI: 0.921-0.999).

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血浆多组学分析揭示中国高血压患者中风诊断前的分子变化
我们的目的是利用质谱法和生物信息学研究血浆蛋白质和代谢物与未来中风发生率之间的相关性,并找出可预测高血压患者中风风险的其他生物标志物。在一项巢式病例对照研究中,收集了 50 名患中风的高血压受试者和 50 名性别、年龄和体重指数相匹配的对照者的基线血浆样本。研究人员对高血压患者进行了血浆非靶向代谢组学分析和基于数据独立采集的蛋白质组学分析,发现有 19 种代谢物和 111 种蛋白质存在差异表达。综合分析表明,血浆中的分子变化表明蛋白质消化吸收、唾液分泌和肌动蛋白细胞骨架的调节失调,同时还存在明显的代谢抑制。C4BPA、己内酰胺、Col15A1 和 HBB 被确定为中风发生的预测因子,而支持向量机(SVM)模型通过整合六种机器学习分类模型被确定为最佳预测模型。SVM 模型在内部验证集(曲线下面积 [AUC]:0.977,95% 置信区间 [CI]:0.941-1.000)和外部独立验证集(AUC:0.973,95% 置信区间:0.921-0.999)中都表现出色。
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来源期刊
Journal of Proteome Research
Journal of Proteome Research 生物-生化研究方法
CiteScore
9.00
自引率
4.50%
发文量
251
审稿时长
3 months
期刊介绍: Journal of Proteome Research publishes content encompassing all aspects of global protein analysis and function, including the dynamic aspects of genomics, spatio-temporal proteomics, metabonomics and metabolomics, clinical and agricultural proteomics, as well as advances in methodology including bioinformatics. The theme and emphasis is on a multidisciplinary approach to the life sciences through the synergy between the different types of "omics".
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