{"title":"Exploiting K-Space in Magnetic Resonance Imaging Diagnosis: Dual-Path Attention Fusion for K-Space Global and Image Local Features.","authors":"Congchao Bian, Can Hu, Ning Cao","doi":"10.3390/bioengineering11100958","DOIUrl":null,"url":null,"abstract":"<p><p>Magnetic resonance imaging (MRI) diagnosis, enhanced by deep learning methods, plays a crucial role in medical image processing, facilitating precise clinical diagnosis and optimal treatment planning. Current methodologies predominantly focus on feature extraction from the image domain, which often results in the loss of global features during down-sampling processes. However, the unique global representational capacity of MRI K-space is often overlooked. In this paper, we present a novel MRI K-space-based global feature extraction and dual-path attention fusion network. Our proposed method extracts global features from MRI K-space data and fuses them with local features from the image domain using a dual-path attention mechanism, thereby achieving accurate MRI segmentation for diagnosis. Specifically, our method consists of four main components: an image-domain feature extraction module, a K-space domain feature extraction module, a dual-path attention feature fusion module, and a decoder. We conducted ablation studies and comprehensive comparisons on the Brain Tumor Segmentation (BraTS) MRI dataset to validate the effectiveness of each module. The results demonstrate that our method exhibits superior performance in segmentation diagnostics, outperforming state-of-the-art methods with improvements of up to 63.82% in the HD95 distance evaluation metric. Furthermore, we performed generalization testing and complexity analysis on the Automated Cardiac Diagnosis Challenge (ACDC) MRI cardiac segmentation dataset. The findings indicate robust performance across different datasets, highlighting strong generalizability and favorable algorithmic complexity. Collectively, these results suggest that our proposed method holds significant potential for practical clinical applications.</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8000,"publicationDate":"2024-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11504126/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bioengineering","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.3390/bioengineering11100958","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Magnetic resonance imaging (MRI) diagnosis, enhanced by deep learning methods, plays a crucial role in medical image processing, facilitating precise clinical diagnosis and optimal treatment planning. Current methodologies predominantly focus on feature extraction from the image domain, which often results in the loss of global features during down-sampling processes. However, the unique global representational capacity of MRI K-space is often overlooked. In this paper, we present a novel MRI K-space-based global feature extraction and dual-path attention fusion network. Our proposed method extracts global features from MRI K-space data and fuses them with local features from the image domain using a dual-path attention mechanism, thereby achieving accurate MRI segmentation for diagnosis. Specifically, our method consists of four main components: an image-domain feature extraction module, a K-space domain feature extraction module, a dual-path attention feature fusion module, and a decoder. We conducted ablation studies and comprehensive comparisons on the Brain Tumor Segmentation (BraTS) MRI dataset to validate the effectiveness of each module. The results demonstrate that our method exhibits superior performance in segmentation diagnostics, outperforming state-of-the-art methods with improvements of up to 63.82% in the HD95 distance evaluation metric. Furthermore, we performed generalization testing and complexity analysis on the Automated Cardiac Diagnosis Challenge (ACDC) MRI cardiac segmentation dataset. The findings indicate robust performance across different datasets, highlighting strong generalizability and favorable algorithmic complexity. Collectively, these results suggest that our proposed method holds significant potential for practical clinical applications.
通过深度学习方法增强的磁共振成像(MRI)诊断在医学图像处理中发挥着至关重要的作用,有助于精确的临床诊断和优化治疗计划。目前的方法主要侧重于从图像域中提取特征,这往往会在下采样过程中导致全局特征的丢失。然而,核磁共振 K 空间独特的全局表示能力往往被忽视。在本文中,我们提出了一种新颖的基于 MRI K 空间的全局特征提取和双路径注意力融合网络。我们提出的方法从核磁共振 K 空间数据中提取全局特征,并利用双路径注意机制将其与图像域的局部特征融合,从而实现精确的核磁共振成像分割诊断。具体来说,我们的方法由四个主要部分组成:图像域特征提取模块、K 空间域特征提取模块、双路径注意特征融合模块和解码器。我们在脑肿瘤分割(BraTS)磁共振成像数据集上进行了消融研究和综合比较,以验证每个模块的有效性。结果表明,我们的方法在分割诊断方面表现出卓越的性能,在 HD95 距离评估指标上,我们的方法优于最先进的方法,改进幅度高达 63.82%。此外,我们还在自动心脏诊断挑战赛(ACDC)核磁共振成像心脏分割数据集上进行了泛化测试和复杂性分析。结果表明,该算法在不同数据集上都表现稳健,突出了较强的泛化能力和良好的算法复杂性。总之,这些结果表明,我们提出的方法在实际临床应用中具有巨大潜力。
期刊介绍:
Aims
Bioengineering (ISSN 2306-5354) provides an advanced forum for the science and technology of bioengineering. It publishes original research papers, comprehensive reviews, communications and case reports. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. All aspects of bioengineering are welcomed from theoretical concepts to education and applications. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. There are, in addition, four key features of this Journal:
● We are introducing a new concept in scientific and technical publications “The Translational Case Report in Bioengineering”. It is a descriptive explanatory analysis of a transformative or translational event. Understanding that the goal of bioengineering scholarship is to advance towards a transformative or clinical solution to an identified transformative/clinical need, the translational case report is used to explore causation in order to find underlying principles that may guide other similar transformative/translational undertakings.
● Manuscripts regarding research proposals and research ideas will be particularly welcomed.
● Electronic files and software regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material.
● We also accept manuscripts communicating to a broader audience with regard to research projects financed with public funds.
Scope
● Bionics and biological cybernetics: implantology; bio–abio interfaces
● Bioelectronics: wearable electronics; implantable electronics; “more than Moore” electronics; bioelectronics devices
● Bioprocess and biosystems engineering and applications: bioprocess design; biocatalysis; bioseparation and bioreactors; bioinformatics; bioenergy; etc.
● Biomolecular, cellular and tissue engineering and applications: tissue engineering; chromosome engineering; embryo engineering; cellular, molecular and synthetic biology; metabolic engineering; bio-nanotechnology; micro/nano technologies; genetic engineering; transgenic technology
● Biomedical engineering and applications: biomechatronics; biomedical electronics; biomechanics; biomaterials; biomimetics; biomedical diagnostics; biomedical therapy; biomedical devices; sensors and circuits; biomedical imaging and medical information systems; implants and regenerative medicine; neurotechnology; clinical engineering; rehabilitation engineering
● Biochemical engineering and applications: metabolic pathway engineering; modeling and simulation
● Translational bioengineering