Naresh Nandakumar, David Hsu, Raheel Ahmed, Archana Venkataraman
{"title":"A DEEP LEARNING FRAMEWORK TO CHARACTERIZE NOISY LABELS IN EPILEPTOGENIC ZONE LOCALIZATION USING FUNCTIONAL CONNECTIVITY.","authors":"Naresh Nandakumar, David Hsu, Raheel Ahmed, Archana Venkataraman","doi":"10.1109/isbi56570.2024.10635583","DOIUrl":null,"url":null,"abstract":"<p><p>Resting-sate fMRI (rs-fMRI) has emerged as a viable tool to localize the epileptogenic zone (EZ) in medication refractory focal epilepsy patients. However, due to clinical protocol, datasets with reliable labels for the EZ are scarce. Some studies have used the entire resection area from post-operative structural T1 scans to act as the ground truth EZ labels during training and testing. These labels are subject to noise, as usually the resection area will be larger than the actual EZ tissue. We develop a mathematical framework for characterizing noisy labels in EZ localization. We use a multi-task deep learning framework to identify both the probability of a noisy label as well as the localization prediction for each ROI. We train our framework on a simulated dataset derived from the Human Connectome Project and evaluate it on both the simulated and a clinical epilepsy dataset. We show superior localization performance in our method against published localization networks on both the real and simulated dataset.</p>","PeriodicalId":74566,"journal":{"name":"Proceedings. IEEE International Symposium on Biomedical Imaging","volume":"2024 ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11500830/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings. IEEE International Symposium on Biomedical Imaging","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/isbi56570.2024.10635583","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/8/22 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Resting-sate fMRI (rs-fMRI) has emerged as a viable tool to localize the epileptogenic zone (EZ) in medication refractory focal epilepsy patients. However, due to clinical protocol, datasets with reliable labels for the EZ are scarce. Some studies have used the entire resection area from post-operative structural T1 scans to act as the ground truth EZ labels during training and testing. These labels are subject to noise, as usually the resection area will be larger than the actual EZ tissue. We develop a mathematical framework for characterizing noisy labels in EZ localization. We use a multi-task deep learning framework to identify both the probability of a noisy label as well as the localization prediction for each ROI. We train our framework on a simulated dataset derived from the Human Connectome Project and evaluate it on both the simulated and a clinical epilepsy dataset. We show superior localization performance in our method against published localization networks on both the real and simulated dataset.
静息态 fMRI(rs-fMRI)已成为药物难治性局灶性癫痫患者定位致痫区(EZ)的可行工具。然而,由于临床协议的限制,具有可靠 EZ 标记的数据集非常稀少。一些研究使用术后结构 T1 扫描中的整个切除区域作为训练和测试期间的 EZ 标签。这些标签会受到噪声的影响,因为切除区域通常比实际的 EZ 组织要大。我们开发了一个数学框架,用于描述 EZ 定位中的噪声标签。我们使用多任务深度学习框架来识别噪声标签的概率以及每个 ROI 的定位预测。我们在源自人类连接组计划的模拟数据集上训练我们的框架,并在模拟数据集和临床癫痫数据集上对其进行评估。在真实数据集和模拟数据集上,我们的方法与已发表的定位网络相比,都显示出更优越的定位性能。