Rationale design and synthesis of new roflumilast analogues as preferential selective and potent PDE-4B inhibitors.

IF 4.5 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Bioorganic Chemistry Pub Date : 2024-10-24 DOI:10.1016/j.bioorg.2024.107911
Ahmed M Moussa, Heba Abdelrasheed Allam, Mohamed K El-Ashrey, Marwa A Fouad, Ahmed A Al-Karmalawy
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Abstract

In this study, we designed and synthesized novel analogues of roflumilast that exhibit selective inhibition of PDE-4B. To accomplish this target; synthesis of novel series (4a-u, 5a-i, and 6) was done, aiming at obtaining new PDE-4B inhibitors hits based on the proposed pharmacophore, 1-(cyclopropylmethoxy)-2-(difluoromethoxy) benzene moiety. Enzyme assay was used to measure the IC50 values for the PDE-4B inhibition of all the synthesized compounds along with roflumilast as a reference drug. The results demonstrated that most of the examined candidates exhibited considerable inhibitory activity against the PDE-4B enzyme. The four compounds (4i, 4k, 4p, and 4q) exhibited the highest potency (IC50 = 7.25, 7.15, 5.50, 7.19 nM, respectively) with no significant inhibition difference from roflumilast (no statistical difference at p < 0.05). Interestingly, compound 4p with 3-OH and 4-OCH3 substituents was found to be the most potent against PDE-4B enzyme (IC50 = 5.50 nM), compared to that of roflumilast (IC50 = 2.36 nM). Moreover, the most potent derivatives 4i, 4k, 4p, and 4q were further tested for PDE-4D inhibitory activity to investigate their PDE-4D/PDE-4B selectivity ratio. Compound 4k showed the highest selectivity towards PDE-4B isozyme more than the reference drug roflumilast (PDE-4D/4B IC50 ratio for compound 4k and roflumilast = 3.22 and 3.02, respectively). Additionally, compound 4p was chosen to test its selectivity for PDE-4B over PDE-8A, PDE-11A, and PDE-1B compared to thereference drug roflumilast. Compound 4p showed approximately 6-fold selectivity for PDE-4B over PDE-8A, about 5-fold selectivity for PDE-4B over PDE-11A, and about 11-fold selectivity of PDE-4B over PDE-1B. Compound 4p showed a higher selectivity towards PDE-4B than PDE-1B, more than the reference compound roflumilast. Furthermore, the most potent compounds (4i, 4k, 4p, 4q) were subjected to further investigation, and their effects on the cAMP level and percentage of inhibition of tumor necrosis factor-alpha (TNF-α) were studied and compared with reference drug roflumilast. Compound 4q showed the highest increase in the level of intracellular cAMP (6.55 ± 0.37 pmol/mL) and compound 4i showed the highest % of TNF-α inhibition (77.22 %). On the other side, a molecular docking study against PDE-4B clarified that all the examined candidates achieved nearly similar binding modes with similar orientations to that of the native roflumilast ligand and showed higher docking scores than roflumilast.

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设计和合成新型罗氟司特类似物作为优先选择性强效 PDE-4B 抑制剂的原理。
在这项研究中,我们设计并合成了对 PDE-4B 具有选择性抑制作用的新型罗氟司特类似物。为了实现这一目标,我们合成了新型系列(4a-u、5a-i 和 6),目的是根据所提出的药效基团--1-(环丙基甲氧基)-2-(二氟甲氧基)苯分子,获得新的 PDE-4B 抑制剂。用酶测定法测量了所有合成化合物对 PDE-4B 抑制作用的 IC50 值,并以罗氟司特作为参考药物。结果表明,大多数候选化合物对 PDE-4B 酶具有相当强的抑制活性。与罗氟司特(IC50 = 2.36 nM)相比,四个化合物(4i、4k、4p 和 4q)表现出最高的效力(IC50 = 7.25、7.15、5.50、7.19 nM),与罗氟司特的抑制作用无明显差异(p 3 取代基对 PDE-4B 酶的抑制作用最强(IC50 = 5.50 nM),无统计学差异)。此外,还进一步测试了最有效的衍生物 4i、4k、4p 和 4q 的 PDE-4D 抑制活性,以研究它们的 PDE-4D/PDE-4B 选择性比。与参考药物罗氟司特相比,化合物 4k 对 PDE-4B 同工酶的选择性最高(化合物 4k 和罗氟司特的 PDE-4D/4B IC50 比值分别为 3.22 和 3.02)。此外,与参比药物罗氟司特相比,化合物 4p 被选来测试其对 PDE-4B 而非 PDE-8A、PDE-11A 和 PDE-1B 的选择性。化合物 4p 对 PDE-4B 的选择性约为 PDE-8A 的 6 倍,对 PDE-4B 的选择性约为 PDE-11A 的 5 倍,对 PDE-4B 的选择性约为 PDE-1B 的 11 倍。化合物 4p 对 PDE-4B 的选择性高于 PDE-1B,高于参比化合物罗氟司特。此外,还进一步研究了最有效的化合物(4i、4k、4p、4q),研究了它们对 cAMP 水平和肿瘤坏死因子-α(TNF-α)抑制百分比的影响,并与参考药物罗氟司特进行了比较。化合物 4q 对细胞内 cAMP 水平的增幅最大(6.55 ± 0.37 pmol/mL),化合物 4i 对 TNF-α 的抑制率最高(77.22%)。另一方面,针对 PDE-4B 的分子对接研究表明,所有候选化合物的结合模式几乎与原生罗氟司特配体的结合模式相似,并且显示出比罗氟司特更高的对接得分。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Bioorganic Chemistry
Bioorganic Chemistry 生物-生化与分子生物学
CiteScore
9.70
自引率
3.90%
发文量
679
审稿时长
31 days
期刊介绍: Bioorganic Chemistry publishes research that addresses biological questions at the molecular level, using organic chemistry and principles of physical organic chemistry. The scope of the journal covers a range of topics at the organic chemistry-biology interface, including: enzyme catalysis, biotransformation and enzyme inhibition; nucleic acids chemistry; medicinal chemistry; natural product chemistry, natural product synthesis and natural product biosynthesis; antimicrobial agents; lipid and peptide chemistry; biophysical chemistry; biological probes; bio-orthogonal chemistry and biomimetic chemistry. For manuscripts dealing with synthetic bioactive compounds, the Journal requires that the molecular target of the compounds described must be known, and must be demonstrated experimentally in the manuscript. For studies involving natural products, if the molecular target is unknown, some data beyond simple cell-based toxicity studies to provide insight into the mechanism of action is required. Studies supported by molecular docking are welcome, but must be supported by experimental data. The Journal does not consider manuscripts that are purely theoretical or computational in nature. The Journal publishes regular articles, short communications and reviews. Reviews are normally invited by Editors or Editorial Board members. Authors of unsolicited reviews should first contact an Editor or Editorial Board member to determine whether the proposed article is within the scope of the Journal.
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