{"title":"A Novel Dictionary Learning Algorithm Based on Prior Knowledge for fMRI Data Analysis","authors":"Fangmin Sheng, Yuhu Shi, Lei Wang, Ying Li, Hua Zhang, Weiming Zeng","doi":"10.1002/ima.23195","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>Task-based functional magnetic resonance imaging (fMRI) has been widely utilized for brain activation detection and functional network analysis. In recent years, the K-singular value decomposition (K-SVD) algorithm has gained increasing attention in the research of fMRI data analysis methods. In this study, we propose a novel temporal feature region-growing constrained K-SVD algorithm that incorporates task-based fMRI temporal prior knowledge and utilizes a region-growing algorithm to infer potential activation locations. The algorithm incorporates temporal and spatial constraints to enhance the detection of brain activation. Specifically, this paper improves the three stages of the traditional K-SVD algorithm. First, in the dictionary initialization stage, the automatic target generation process with an independent component analysis algorithm is utilized in conjunction with prior knowledge to enhance the accuracy of initialization. Second, in the sparse coding stage, the region-growing algorithm is employed to infer potential activation locations based on temporal prior knowledge, thereby imposing spatial constraints to limit the extent of activation regions. Finally, in the dictionary learning stage, soft constraints and low correlation constraints are applied to reinforce the consistency with prior knowledge and enhance the robustness of learning for task-related atoms. The proposed method was validated on simulated and real fMRI data, showing superior performance in detecting brain activation compared with traditional methods. The results indicate that the algorithm accurately identifies activated brain regions, providing an effective approach for studying brain function in clinical applications.</p>\n </div>","PeriodicalId":14027,"journal":{"name":"International Journal of Imaging Systems and Technology","volume":"34 6","pages":""},"PeriodicalIF":3.0000,"publicationDate":"2024-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Imaging Systems and Technology","FirstCategoryId":"94","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ima.23195","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENGINEERING, ELECTRICAL & ELECTRONIC","Score":null,"Total":0}
引用次数: 0
Abstract
Task-based functional magnetic resonance imaging (fMRI) has been widely utilized for brain activation detection and functional network analysis. In recent years, the K-singular value decomposition (K-SVD) algorithm has gained increasing attention in the research of fMRI data analysis methods. In this study, we propose a novel temporal feature region-growing constrained K-SVD algorithm that incorporates task-based fMRI temporal prior knowledge and utilizes a region-growing algorithm to infer potential activation locations. The algorithm incorporates temporal and spatial constraints to enhance the detection of brain activation. Specifically, this paper improves the three stages of the traditional K-SVD algorithm. First, in the dictionary initialization stage, the automatic target generation process with an independent component analysis algorithm is utilized in conjunction with prior knowledge to enhance the accuracy of initialization. Second, in the sparse coding stage, the region-growing algorithm is employed to infer potential activation locations based on temporal prior knowledge, thereby imposing spatial constraints to limit the extent of activation regions. Finally, in the dictionary learning stage, soft constraints and low correlation constraints are applied to reinforce the consistency with prior knowledge and enhance the robustness of learning for task-related atoms. The proposed method was validated on simulated and real fMRI data, showing superior performance in detecting brain activation compared with traditional methods. The results indicate that the algorithm accurately identifies activated brain regions, providing an effective approach for studying brain function in clinical applications.
期刊介绍:
The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals.
IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging.
The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered.
The scope of the journal includes, but is not limited to, the following in the context of biomedical research:
Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.;
Neuromodulation and brain stimulation techniques such as TMS and tDCS;
Software and hardware for imaging, especially related to human and animal health;
Image segmentation in normal and clinical populations;
Pattern analysis and classification using machine learning techniques;
Computational modeling and analysis;
Brain connectivity and connectomics;
Systems-level characterization of brain function;
Neural networks and neurorobotics;
Computer vision, based on human/animal physiology;
Brain-computer interface (BCI) technology;
Big data, databasing and data mining.