Attention-based q-space Deep Learning Generalized for Accelerated Diffusion Magnetic Resonance Imaging.

Abstract

Diffusion magnetic resonance imaging (dMRI) is a non-invasive method for capturing the microanatomical information of tissues by measuring the diffusion weighted signals along multiple directions, which is widely used in the quantification of microstructures. Obtaining microscopic parameters requires dense sampling in the q space, leading to significant time consumption. The most popular approach to accelerating dMRI acquisition is to undersample the q-space data, along with applying deep learning methods to reconstruct quantitative diffusion parameters. However, the reliance on a predetermined q-space sampling strategy often constrains traditional deep learning-based reconstructions. The present study proposed a novel deep learning model, named attention-based q-space deep learning (aqDL), to implement the reconstruction with variable q-space sampling strategies. The aqDL maps dMRI data from different scanning strategies onto a common feature space by using a series of Transformer encoders. The latent features are employed to reconstruct dMRI parameters via a multilayer perceptron. The performance of the aqDL model was assessed utilizing the Human Connectome Project datasets at varying undersampling numbers. To validate its generalizability, the model was further tested on two additional independent datasets. Our results showed that aqDL consistently achieves the highest reconstruction accuracy at various undersampling numbers, regardless of whether variable or predetermined q-space scanning strategies are employed. These findings suggest that aqDL has the potential to be used on general clinical dMRI datasets.