Machine learning model reveals the role of angiogenesis and EMT genes in glioma patient prognosis and immunotherapy.

IF 5.7 2区 生物学 Q1 BIOLOGY Biology Direct Pub Date : 2024-11-12 DOI:10.1186/s13062-024-00565-z
Suyin Feng, Long Zhu, Yan Qin, Kun Kou, Yongtai Liu, Guangmin Zhang, Ziheng Wang, Hua Lu, Runfeng Sun
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Abstract

Gliomas represent a highly aggressive class of tumors located in the brain. Despite the availability of multiple treatment modalities, the prognosis for patients diagnosed with glioma remains unfavorable. Therefore, further exploration of new biomarkers is crucial to enhance the prognostic assessment of glioma and to investigate more effective treatment options. In this research, we utilized multiple machine learning techniques to assess the significance of genes related to angiogenesis and epithelial-mesenchymal transition (EMT) in the context of prognosis and treatment for glioma patients. The random forest algorithm highlighted the significance of CALU, and further analysis indicated that the effect of CALU on glioma progression may be regulated by MYC. Different machine learning approaches were employed in our investigation to uncover crucial genes associated with angiogenesis and EMT in glioma. Our findings verify the connection between these genes and the prognosis of patients with glioma, as well as the results of immunotherapeutic interventions. Notably, through experimental verification, we identified CALU as a new prognostic marker for glioma, and inhibiting the expression of CALU can impede the progression of glioma.

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机器学习模型揭示了血管生成和 EMT 基因在胶质瘤患者预后和免疫疗法中的作用。
胶质瘤是位于脑部的一类侵袭性极强的肿瘤。尽管有多种治疗方法,但胶质瘤患者的预后仍然不容乐观。因此,进一步探索新的生物标志物对于加强胶质瘤的预后评估和研究更有效的治疗方案至关重要。在这项研究中,我们利用多种机器学习技术评估了与血管生成和上皮-间质转化(EMT)相关的基因在胶质瘤患者预后和治疗中的意义。随机森林算法突出了CALU的重要性,进一步分析表明CALU对胶质瘤进展的影响可能受MYC调控。我们的研究采用了不同的机器学习方法,以发现与胶质瘤血管生成和EMT相关的关键基因。我们的研究结果验证了这些基因与胶质瘤患者预后以及免疫治疗干预结果之间的联系。值得注意的是,通过实验验证,我们发现CALU是胶质瘤新的预后标志物,抑制CALU的表达可以阻碍胶质瘤的进展。
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来源期刊
Biology Direct
Biology Direct 生物-生物学
CiteScore
6.40
自引率
10.90%
发文量
32
审稿时长
7 months
期刊介绍: Biology Direct serves the life science research community as an open access, peer-reviewed online journal, providing authors and readers with an alternative to the traditional model of peer review. Biology Direct considers original research articles, hypotheses, comments, discovery notes and reviews in subject areas currently identified as those most conducive to the open review approach, primarily those with a significant non-experimental component.
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