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Retraction Note: Regulating ferroptosis by non-coding RNAs in hepatocellular carcinoma. 注:通过非编码rna调节肝细胞癌中的铁下垂。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-02-10 DOI: 10.1186/s13062-026-00737-z
Lijie Sun, Hongfei Cao, Yanzhe Wang, Hongquan Wang
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引用次数: 0
A dopaminergic projection from the ventral tegmental area to the dorsal raphe nucleus critically regulates propofol anesthesia in mice. 从腹侧被盖区到中缝背核的多巴胺能投射对小鼠异丙酚麻醉有重要的调节作用。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-02-09 DOI: 10.1186/s13062-026-00736-0
Junjie He, Tianxi Yao, Huan Guo, Haichuan He, Zhuangzhuang Tian, Ketao Ma, Jiangwen Yin, Yan Li
{"title":"A dopaminergic projection from the ventral tegmental area to the dorsal raphe nucleus critically regulates propofol anesthesia in mice.","authors":"Junjie He, Tianxi Yao, Huan Guo, Haichuan He, Zhuangzhuang Tian, Ketao Ma, Jiangwen Yin, Yan Li","doi":"10.1186/s13062-026-00736-0","DOIUrl":"https://doi.org/10.1186/s13062-026-00736-0","url":null,"abstract":"","PeriodicalId":9164,"journal":{"name":"Biology Direct","volume":" ","pages":""},"PeriodicalIF":4.9,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146141243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CircADAM9 activates autophagy via miR-302b-3p/ULK1 axis to improve depressive-like behaviors. CircADAM9通过miR-302b-3p/ULK1轴激活自噬,改善抑郁样行为。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-02-07 DOI: 10.1186/s13062-026-00738-y
Shan Liu, Shangmin Yu

Background: Depression is a prevalent mental disorder, and its pathogenesis has not yet been fully elucidated. Circular RNAs (CircRNAs) have exhibit critical regulatory role in depression, while Unc-51-like kinase 1 (ULK1)-mediated autophagy participates in the pathophysiology of the disorder. Nevertheless, the potential involvement of circRNAs in modulating ULK1-mediated autophagy in depression remains unclear.

Objectives: This study aimed to identify depression-associated circRNAs regulating ULK1-medaited autophagy, and uncover the underlying mechanisms.

Methods: The depression model was established in mice using chronic unpredictable mild stress (CUMS) procedure. RNA sequencing and bioinformatics analysis were carried out to screen signaling pathways, circRNAs and microRNAs (miRNAs) related to depression. Overexpression and knockdown of circRNAs or miRNAs were conducted by lentivirus microinjection and cell transfection. The depression-like phenotypes were assessed through behavioral tests. Western blot, immunofluorescence and transmission electron microscopy (TEM) were employed to evaluated ULK1-mediated autophagy. RNA pull-down and dual-luciferase reporter assay was executed to explore the underlying mechanisms.

Results: CircADAM9 exhibited the most significant downregulation in CUMS mice among the differentially expressed circRNAs. Overexpression of circADAM9 relieved depressive-like behaviors, and promoted ULK1-mediated autophagy in vivo and in vitro. Importantly, circADAM9 sponged miR-302b-3p to regulate Ulk1 gene expression, and miR-302b-3p mimics diminished the behavioral improvements and pro-autophagic effect modulated by circADAM9.

Conclusion: We identified circADAM9 as a novel regulator in depression, which activated autophagy via miR-302b-3p/ULK1 axis to improve depressive-like behaviors. Our findings would provide a new potential therapeutic target for the treatment of depression.

背景:抑郁症是一种普遍存在的精神障碍,其发病机制尚未完全阐明。环状rna (CircRNAs)在抑郁症中表现出关键的调节作用,而unc -51样激酶1 (ULK1)介导的自噬参与了该疾病的病理生理。然而,circrna在调节抑郁症中ulk1介导的自噬中的潜在参与尚不清楚。目的:本研究旨在鉴定调节ulk1介导的自噬的抑郁相关环状rna,并揭示其潜在机制。方法:采用慢性不可预测轻度应激法(CUMS)建立小鼠抑郁模型。通过RNA测序和生物信息学分析,筛选与抑郁症相关的信号通路、circRNAs和microRNAs (miRNAs)。通过慢病毒显微注射和细胞转染对circRNAs或miRNAs进行过表达和敲低。通过行为测试评估抑郁样表型。采用Western blot、免疫荧光和透射电镜(TEM)观察ulk1介导的自噬作用。采用RNA下拉和双荧光素酶报告基因试验来探索其潜在机制。结果:在差异表达的circRNAs中,CircADAM9在CUMS小鼠中表现出最显著的下调。circADAM9的过表达缓解了抑郁样行为,促进了体内和体外ulk1介导的自噬。重要的是,circADAM9海绵miR-302b-3p调节Ulk1基因表达,miR-302b-3p模拟物减少了circADAM9调节的行为改善和促自噬作用。结论:我们发现circADAM9在抑郁症中是一种新的调节因子,它通过miR-302b-3p/ULK1轴激活自噬,改善抑郁样行为。我们的发现将为抑郁症的治疗提供一个新的潜在的治疗靶点。
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引用次数: 0
Radix Rehmanniae Preparata polysaccharide promoted zebrafish heart regeneration by activating the IFN-γ/NF-κB signaling axis. 生地黄多糖通过激活IFN-γ/NF-κB信号轴促进斑马鱼心脏再生。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-02-02 DOI: 10.1186/s13062-026-00731-5
Yijing Yan, Keying Tao, Huizhen Xie, Huixian Zhou, Qiong Wu, Shiming Pu, Dijie Li, Ziqi Guo, Zuping Zhou, Shisan Xu
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引用次数: 0
Revealing FPR1 as a potential pathogenic biomarker for aortic dissection based on Mendelian randomization, single-cell transcriptome and clinical data analysis. 基于孟德尔随机化、单细胞转录组和临床数据分析揭示FPR1作为主动脉夹层潜在致病生物标志物
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-01-31 DOI: 10.1186/s13062-026-00732-4
Zihao Liu, Haoyu Ran, Yuquan Tang, Lei Li, Zhenyu Gao, Zhixin Li, Yucheng Xie, Qinglian Zeng, Fengxu Yu
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引用次数: 0
Acrylamide disrupts meiotic G2/M transition and SAC activity during oocyte maturation. 丙烯酰胺破坏卵母细胞成熟过程中减数分裂G2/M转变和SAC活性。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-01-30 DOI: 10.1186/s13062-026-00733-3
Shanshan Chen, Peng-Xia Wang, Yan-Ting Wang, Xing-He Ke, Minmin Ou, Shao-Chen Sun, Bi-Yun Liao, Xuanyi Chen

Acrylamide is a synthetic material which is widely used in water treatment and paper manufacturing, and it is also generated from food formation, which shows neurological effects, skin irritation, or reproductive toxicity. Several studies focused on the effects of acrylamide on mitochondria and apoptosis in oocytes. In present study, we reported that acrylamide disturbed cell cycle progression of mouse oocyte meiosis. Our data showed that acrylamide caused both germinal vesicle (GV) breakdown and polar body extrusion defects. Further analysis indicated that acrylamide induced DNA damage in the GV oocytes, showing with increased γ-H2A.X expression, which active CHK2 for G2/M transition. This could be confirmed by the altered Cyclin B1 and CDK1 expression in oocytes. Besides, we found kinetochore-microtubule attachment was aberrant in metaphase I (MI) oocytes, which active spindle assembly checkpoint (SAC) for polar body extrusion, and this was confirmed by the consistent presentence of BubR1 and Bub3. This was due to the reduced tubulin acetylation-based microtubule stability, since HDAC6 and NAT10 expression was changed and cold treatment reduced the tubulin polymerization. Taken together, our study reported that acrylamide exposure disrupted cell cycle progression through DNA damage-based MPF activity and tubulin acetylation-based SAC activation in oocytes.

丙烯酰胺是一种合成材料,广泛用于水处理和造纸,也可从食物中产生,对神经系统有影响,对皮肤有刺激作用,或对生殖有毒性。一些研究集中在丙烯酰胺对卵母细胞线粒体和细胞凋亡的影响。本研究报道了丙烯酰胺干扰小鼠卵母细胞减数分裂的细胞周期进程。我们的数据显示丙烯酰胺引起生发囊泡(GV)破裂和极体挤压缺陷。进一步分析发现丙烯酰胺诱导GV卵母细胞DNA损伤,表现为γ-H2A升高。X表达,激活CHK2进行G2/M转化。这可以通过卵母细胞中Cyclin B1和CDK1表达的改变来证实。此外,我们发现着丝点-微管附着在中期I (MI)卵母细胞中是异常的,这激活了纺锤体组装检查点(SAC),用于极体挤压,BubR1和Bub3的一致存在证实了这一点。这是由于基于微管蛋白乙酰化的微管稳定性降低,因为HDAC6和NAT10的表达发生了变化,冷处理减少了微管蛋白的聚合。综上所述,我们的研究报告了丙烯酰胺暴露通过卵母细胞中基于DNA损伤的MPF活性和基于微管蛋白乙酰化的SAC激活来破坏细胞周期进程。
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引用次数: 0
Catalase inhibits tumor growth by alleviating oxidative stress and promoting the polarization of tumor-associated macrophage from M2 to M1 phenotype in non-small cell lung cancer. 在非小细胞肺癌中,过氧化氢酶通过减轻氧化应激和促进肿瘤相关巨噬细胞从M2表型向M1表型的极化来抑制肿瘤生长。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-01-23 DOI: 10.1186/s13062-026-00730-6
Yi Tian, Yi-Ru Liu, Hai-Zhen Jin, Qiao-Xin Lin, Wen-Ya Zhao, Wen-Wen Song, Yan-Na Gong, Yi-Ting Deng, Shan-Shan Wang, Kai Wang, Ling Tian, Dian-Na Gu
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引用次数: 0
Robust SH2 binding affinity indicates minimal SH3-to-SH2 communication in Grb2. 强健的SH2结合亲和性表明Grb2中sh3 -SH2之间的通信最小。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-01-23 DOI: 10.1186/s13062-026-00729-z
Eduarda Santos Ventura, Mariana Di Felice, Julian Toso, Valeria Pennacchietti, Angelo Toto, Stefano Gianni
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引用次数: 0
Polarity protein Par3 deficiency promotes metastasis of bladder cancer via interaction of Ppp1r12c. 极性蛋白Par3缺乏通过Ppp1r12c相互作用促进膀胱癌转移。
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-01-20 DOI: 10.1186/s13062-026-00727-1
Jinming Cai, Can Jiao, Yingying Xu, Fang Zhang, Li Zhang, She Chen, Bing Shen
{"title":"Polarity protein Par3 deficiency promotes metastasis of bladder cancer via interaction of Ppp1r12c.","authors":"Jinming Cai, Can Jiao, Yingying Xu, Fang Zhang, Li Zhang, She Chen, Bing Shen","doi":"10.1186/s13062-026-00727-1","DOIUrl":"https://doi.org/10.1186/s13062-026-00727-1","url":null,"abstract":"","PeriodicalId":9164,"journal":{"name":"Biology Direct","volume":" ","pages":""},"PeriodicalIF":4.9,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146008155","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synergistic anticancer effects of cabozantinib and cuproptosis induction driven by DHRS2-KAT2A-H3K27ac axis in clear cell renal cell carcinoma. 卡博赞替尼与DHRS2-KAT2A-H3K27ac轴驱动的铜增生诱导在透明细胞肾细胞癌中的协同抗癌作用
IF 4.9 2区 生物学 Q1 BIOLOGY Pub Date : 2026-01-20 DOI: 10.1186/s13062-025-00721-z
Yilong Cao, Chao Xu, Bowei Zhang, Changbao Qu, Yuepeng Liu, Bei Shi, Xiaoling Li, Jiehan Li, Zeyuan Zhang, Shengtao Dai, Qingyun Sun, Yaxuan Wang, Junfei Gu
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引用次数: 0
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