A scale-invariant log-normal droplet size distribution below the critical concentration for protein phase separation.

IF 6.4 1区 生物学 Q1 BIOLOGY eLife Pub Date : 2024-11-18 DOI:10.7554/eLife.94214
Tommaso Amico, Samuel Toluwanimi Dada, Andrea Lazzari, Michaela Brezinova, Antonio Trovato, Michele Vendruscolo, Monika Fuxreiter, Amos Maritan
{"title":"A scale-invariant log-normal droplet size distribution below the critical concentration for protein phase separation.","authors":"Tommaso Amico, Samuel Toluwanimi Dada, Andrea Lazzari, Michaela Brezinova, Antonio Trovato, Michele Vendruscolo, Monika Fuxreiter, Amos Maritan","doi":"10.7554/eLife.94214","DOIUrl":null,"url":null,"abstract":"<p><p>Many proteins have been recently shown to undergo a process of phase separation that leads to the formation of biomolecular condensates. Intriguingly, it has been observed that some of these proteins form dense droplets of sizeable dimensions already below the critical concentration, which is the concentration at which phase separation occurs. To understand this phenomenon, which is not readily compatible with classical nucleation theory, we investigated the properties of the droplet size distributions as a function of protein concentration. We found that these distributions can be described by a scale-invariant log-normal function with an average that increases progressively as the concentration approaches the critical concentration from below. The results of this scaling analysis suggest the existence of a universal behaviour independent of the sequences and structures of the proteins undergoing phase separation. While we refrain from proposing a theoretical model here, we suggest that any model of protein phase separation should predict the scaling exponents that we reported here from the fitting of experimental measurements of droplet size distributions. Furthermore, based on these observations, we show that it is possible to use the scale invariance to estimate the critical concentration for protein phase separation.</p>","PeriodicalId":11640,"journal":{"name":"eLife","volume":"13 ","pages":""},"PeriodicalIF":6.4000,"publicationDate":"2024-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11573347/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"eLife","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.7554/eLife.94214","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Many proteins have been recently shown to undergo a process of phase separation that leads to the formation of biomolecular condensates. Intriguingly, it has been observed that some of these proteins form dense droplets of sizeable dimensions already below the critical concentration, which is the concentration at which phase separation occurs. To understand this phenomenon, which is not readily compatible with classical nucleation theory, we investigated the properties of the droplet size distributions as a function of protein concentration. We found that these distributions can be described by a scale-invariant log-normal function with an average that increases progressively as the concentration approaches the critical concentration from below. The results of this scaling analysis suggest the existence of a universal behaviour independent of the sequences and structures of the proteins undergoing phase separation. While we refrain from proposing a theoretical model here, we suggest that any model of protein phase separation should predict the scaling exponents that we reported here from the fitting of experimental measurements of droplet size distributions. Furthermore, based on these observations, we show that it is possible to use the scale invariance to estimate the critical concentration for protein phase separation.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
蛋白质相分离临界浓度以下的尺度不变对数正态液滴粒度分布。
最近的研究表明,许多蛋白质会发生相分离过程,从而形成生物分子凝聚物。有趣的是,我们观察到其中一些蛋白质在低于临界浓度(即发生相分离的浓度)时就会形成尺寸相当大的致密液滴。为了理解这种与经典成核理论不相容的现象,我们研究了液滴大小分布与蛋白质浓度的函数关系。我们发现,这些分布可以用尺度不变的对数正态函数来描述,其平均值随着浓度从下向上接近临界浓度而逐渐增大。这种比例分析的结果表明,存在着一种与发生相分离的蛋白质的序列和结构无关的普遍行为。虽然我们在此不提出理论模型,但我们认为,任何蛋白质相分离模型都应预测出我们在此通过液滴大小分布的实验测量拟合得出的缩放指数。此外,根据这些观察结果,我们还证明可以利用尺度不变性来估算蛋白质相分离的临界浓度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
eLife
eLife BIOLOGY-
CiteScore
12.90
自引率
3.90%
发文量
3122
审稿时长
17 weeks
期刊介绍: eLife is a distinguished, not-for-profit, peer-reviewed open access scientific journal that specializes in the fields of biomedical and life sciences. eLife is known for its selective publication process, which includes a variety of article types such as: Research Articles: Detailed reports of original research findings. Short Reports: Concise presentations of significant findings that do not warrant a full-length research article. Tools and Resources: Descriptions of new tools, technologies, or resources that facilitate scientific research. Research Advances: Brief reports on significant scientific advancements that have immediate implications for the field. Scientific Correspondence: Short communications that comment on or provide additional information related to published articles. Review Articles: Comprehensive overviews of a specific topic or field within the life sciences.
期刊最新文献
NE contribution to rebooting unconsciousness caused by midazolam. Neurotrophic factor Neuritin modulates T cell electrical and metabolic state for the balance of tolerance and immunity. The gamma rhythm as a guardian of brain health. Zika virus remodels and hijacks IGF2BP2 ribonucleoprotein complex to promote viral replication organelle biogenesis. Extramacrochaetae regulates Notch signaling in the Drosophila eye through non-apoptotic caspase activity.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1