Life in turbulent waters: unsteady biota–flow interactions across scales

IF 3.7 1区 地球科学 Q1 LIMNOLOGY Limnology and Oceanography Pub Date : 2024-11-18 DOI:10.1002/lno.12732
Julia C. Mullarney, Josef Daniel Ackerman, Steeve Comeau, Mimi A. R. Koehl, Elisa Schaum, Rafael O. Tinoco, Danielle J. Wain, Hidekatsu Yamazaki
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The strength of turbulent motions also controls the transfer of key properties within aquatic environments, as well as the flux across the pelagic–benthic and water–air boundaries. Modern laboratory facilities have allowed for turbulent conditions to be carefully controlled, while advances in field instrumentation and processing techniques have improved characterization of turbulence. Combined, these new capabilities have provided novel insights into the connections between physical and biological or geochemical processes.</p><p>This special issue of <i>Limnology and Oceanography</i> explores how organisms experience and respond to turbulence at different length and time scales, and how the effects on individual behavior influence the ecosystem-scale responses. The contributions in this issue add to the breadth of knowledge in this area. This breadth is also demonstrated in the companion virtual issue online at https://aslopubs.onlinelibrary.wiley.com/doi/toc/10.1002/(ISSN)1939-5590.life-turbulent-waters. The virtual issue, which also includes many papers from <i>Limnology and Oceanography: Fluids and Environments</i>, is intended as a living and growing compilation of flow-biota studies that showcases manuscripts from the 1960s to present, with a steady increase in numbers beginning in the early 1990s. We emphasize the advances on flow–biota interactions rather than the large number of seminal papers on physical aspects of turbulence and influence of turbulent flux on water bodies that have also been published in <i>Limnology and Oceanography</i>. While the papers in the special issue encompass a wide range of topics, several key themes nonetheless emerge.</p><p>Several of the new contributions focus on the behavioral or ecophysiological responses of mostly marine planktonic organisms to turbulent motions across different spatial scales. There are, however, several contributions that demonstrate that freshwater zooplankton exhibit both similar and contrasting responses compared with marine zooplankton. Du Gurung et al. (<span>2024</span>) examined how the swimming behavior of freshwater <i>Daphnia magna</i> responds to multiple stimuli. The <i>Daphnia</i> were exposed to changes in hydrodynamic conditions mimicking larger-scale Langmuir circulation cells (10<sup>−7</sup> &lt; <i>ε</i> &lt; 10<sup>−5</sup> m<sup>2</sup> s<sup>−3</sup>), light exposure, and contact with oil, which hinders swimming ability. Aggregations of <i>Daphnia</i> were observed within a “Goldilocks” zone—when flow velocities were faster than still water but slower than typical swimming speeds, which is similar to observations with marine zooplankton. Conversely, Ruszczyk et al. (<span>2024</span>) found that the swimming response of freshwater copepod, <i>Hesperodiaptomus shoshone</i>, to turbulence differed from marine copepods. Their laboratory experiment examined the response of <i>Hesperodiaptomus</i> to turbulence using a Burgers' vortex apparatus to mimic small-scale dissipative eddies. The results revealed linear swimming trajectories in both male and female copepods at all turbulence levels, which contrasts with the spiral swimming trajectories reported in marine species (<i>Acartia tonsa</i>, <i>Temora longicornis</i>, and <i>Calanus finmarchicus</i>). The authors presented several plausible explanations for the difference in swimming in <i>Hesperodiaptomus</i> including the differences in setal arrays, their ecological niches, and the limited mixing in freshwater pond environments.</p><p>Other studies focused on an isolated component of turbulence—vorticity. Goulet et al. (<span>2024</span>) examined whether exposure to vorticity would affect the intertwined responses of swimming and feeding behaviors of freshwater <i>Daphnia magna</i>. They found that clearance rates of algae increased with small levels of vorticity but declined as vorticity increased. This ramp-like or unimodal feeding response to hydrodynamic forcing has been found in other freshwater and marine organisms. Goulet et al. (<span>2024</span>) determined that the normal hop-sink swimming ability of <i>Daphnia</i> was also affected by vorticity, which reduced the number of hops and their ability to orient. The swimming response to vorticity may explain the feeding response in freshwater <i>Daphnia</i>, but it contrasts with a lack of response to vorticity in marine copepods (<i>A. tonsa</i>), perhaps due to the stronger swimming ability of the latter taxon.</p><p>The aforementioned studies demonstrate the advantages of using laboratory studies to reveal relationships between hydrodynamics and organism behavior and ecophysiology, which are difficult to measure in nature. These studies, however, also demonstrate the need to examine these relationships using a diversity of taxa reflective of nature, rather than relying on a limited number of model systems. Moreover, these studies also raise many questions regarding the cascading influences of such behaviors and ecophysiology both within and across trophic levels. We note that one critical factor discussed in several papers within the Special Issue is the importance of ensuring that laboratory experiments are ecologically relevant and that the experiments provide an accurate representation of the spatial and temporal fluctuations of the flow, shear, and vorticity in mimicking such fluctuations encountered by the studied organisms in the field. Indeed, this concern also raises questions regarding the selection of the appropriate descriptor for turbulent conditions, as presented by Franks and Inman (<span>2024</span>). They argue that the dissipation rate of turbulent kinetic energy (<i>ε</i>) does not capture information on the instantaneous spatial structure of turbulent shear at the scale of individual plankton. They suggest the use of a statistical approach using the probability distributions of the microscale motions as a potential way forward in the future.</p><p>Another key theme in both the virtual and special issue can broadly be described as the control exerted by large-scale turbulent features on the spatial and temporal distribution of (1) matter relevant for the survival and ecophysiological processes of organisms, and (2) of the organisms themselves. Sato et al. (<span>2024</span>) used a field and modeling study to unravel relationships between coastline type, hydrodynamic regime, and dispersal patterns of larval anemonefishes. Their analysis provided the surprising result that semi-enclosed bays exhibited lower local retention and self-recruitment than open-coast locations. Closer examination revealed that local topographic features drove cross-shore flows and controlled dispersal patterns rather than coastline shape. A multitude of different traits (from dispersal to metabolic traits) are indirectly affected by turbulent dynamics. In an Amazon freshwater stream system, Machado-Silva et al. (<span>2024</span>) explored the effect of hydrodynamic regime on dark carbon fixation in freshwater, an understudied process. Rates of dark carbon fixation were found to be of similar magnitude to heterotrophic production in water and litter, but lower than in sediments. Rates were also greater in lotic relative to lentic systems and although turbulence was not measured, the results highlight the need for further investigation of this process in freshwater systems. Turbulence also affects the flux of matter between water column and benthic habitats. In their review article, however, Porter and Cornwell (<span>2024</span>) caution that use of mesocosm experiments may lead to incorrect conclusions if benthic and water column processes are decoupled. 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Abstract

Aquatic organisms generate and are subject to a plethora of physical forces that are ultimately related to the movement of the water body in which they reside. In particular, turbulence exposes organisms to rapidly varying conditions across a wide range of spatial scales, from small-scale (microscopic) changes to meso-scale eddies and circulations found in lakes, oceans, and connecting water bodies such as rivers and estuaries. Turbulence is often characterized by the dissipation rate of turbulent kinetic energy (ε), which varies over about six orders of magnitude in lakes and around nine orders of magnitude in the oceans. The strength of turbulent motions also controls the transfer of key properties within aquatic environments, as well as the flux across the pelagic–benthic and water–air boundaries. Modern laboratory facilities have allowed for turbulent conditions to be carefully controlled, while advances in field instrumentation and processing techniques have improved characterization of turbulence. Combined, these new capabilities have provided novel insights into the connections between physical and biological or geochemical processes.

This special issue of Limnology and Oceanography explores how organisms experience and respond to turbulence at different length and time scales, and how the effects on individual behavior influence the ecosystem-scale responses. The contributions in this issue add to the breadth of knowledge in this area. This breadth is also demonstrated in the companion virtual issue online at https://aslopubs.onlinelibrary.wiley.com/doi/toc/10.1002/(ISSN)1939-5590.life-turbulent-waters. The virtual issue, which also includes many papers from Limnology and Oceanography: Fluids and Environments, is intended as a living and growing compilation of flow-biota studies that showcases manuscripts from the 1960s to present, with a steady increase in numbers beginning in the early 1990s. We emphasize the advances on flow–biota interactions rather than the large number of seminal papers on physical aspects of turbulence and influence of turbulent flux on water bodies that have also been published in Limnology and Oceanography. While the papers in the special issue encompass a wide range of topics, several key themes nonetheless emerge.

Several of the new contributions focus on the behavioral or ecophysiological responses of mostly marine planktonic organisms to turbulent motions across different spatial scales. There are, however, several contributions that demonstrate that freshwater zooplankton exhibit both similar and contrasting responses compared with marine zooplankton. Du Gurung et al. (2024) examined how the swimming behavior of freshwater Daphnia magna responds to multiple stimuli. The Daphnia were exposed to changes in hydrodynamic conditions mimicking larger-scale Langmuir circulation cells (10−7 < ε < 10−5 m2 s−3), light exposure, and contact with oil, which hinders swimming ability. Aggregations of Daphnia were observed within a “Goldilocks” zone—when flow velocities were faster than still water but slower than typical swimming speeds, which is similar to observations with marine zooplankton. Conversely, Ruszczyk et al. (2024) found that the swimming response of freshwater copepod, Hesperodiaptomus shoshone, to turbulence differed from marine copepods. Their laboratory experiment examined the response of Hesperodiaptomus to turbulence using a Burgers' vortex apparatus to mimic small-scale dissipative eddies. The results revealed linear swimming trajectories in both male and female copepods at all turbulence levels, which contrasts with the spiral swimming trajectories reported in marine species (Acartia tonsa, Temora longicornis, and Calanus finmarchicus). The authors presented several plausible explanations for the difference in swimming in Hesperodiaptomus including the differences in setal arrays, their ecological niches, and the limited mixing in freshwater pond environments.

Other studies focused on an isolated component of turbulence—vorticity. Goulet et al. (2024) examined whether exposure to vorticity would affect the intertwined responses of swimming and feeding behaviors of freshwater Daphnia magna. They found that clearance rates of algae increased with small levels of vorticity but declined as vorticity increased. This ramp-like or unimodal feeding response to hydrodynamic forcing has been found in other freshwater and marine organisms. Goulet et al. (2024) determined that the normal hop-sink swimming ability of Daphnia was also affected by vorticity, which reduced the number of hops and their ability to orient. The swimming response to vorticity may explain the feeding response in freshwater Daphnia, but it contrasts with a lack of response to vorticity in marine copepods (A. tonsa), perhaps due to the stronger swimming ability of the latter taxon.

The aforementioned studies demonstrate the advantages of using laboratory studies to reveal relationships between hydrodynamics and organism behavior and ecophysiology, which are difficult to measure in nature. These studies, however, also demonstrate the need to examine these relationships using a diversity of taxa reflective of nature, rather than relying on a limited number of model systems. Moreover, these studies also raise many questions regarding the cascading influences of such behaviors and ecophysiology both within and across trophic levels. We note that one critical factor discussed in several papers within the Special Issue is the importance of ensuring that laboratory experiments are ecologically relevant and that the experiments provide an accurate representation of the spatial and temporal fluctuations of the flow, shear, and vorticity in mimicking such fluctuations encountered by the studied organisms in the field. Indeed, this concern also raises questions regarding the selection of the appropriate descriptor for turbulent conditions, as presented by Franks and Inman (2024). They argue that the dissipation rate of turbulent kinetic energy (ε) does not capture information on the instantaneous spatial structure of turbulent shear at the scale of individual plankton. They suggest the use of a statistical approach using the probability distributions of the microscale motions as a potential way forward in the future.

Another key theme in both the virtual and special issue can broadly be described as the control exerted by large-scale turbulent features on the spatial and temporal distribution of (1) matter relevant for the survival and ecophysiological processes of organisms, and (2) of the organisms themselves. Sato et al. (2024) used a field and modeling study to unravel relationships between coastline type, hydrodynamic regime, and dispersal patterns of larval anemonefishes. Their analysis provided the surprising result that semi-enclosed bays exhibited lower local retention and self-recruitment than open-coast locations. Closer examination revealed that local topographic features drove cross-shore flows and controlled dispersal patterns rather than coastline shape. A multitude of different traits (from dispersal to metabolic traits) are indirectly affected by turbulent dynamics. In an Amazon freshwater stream system, Machado-Silva et al. (2024) explored the effect of hydrodynamic regime on dark carbon fixation in freshwater, an understudied process. Rates of dark carbon fixation were found to be of similar magnitude to heterotrophic production in water and litter, but lower than in sediments. Rates were also greater in lotic relative to lentic systems and although turbulence was not measured, the results highlight the need for further investigation of this process in freshwater systems. Turbulence also affects the flux of matter between water column and benthic habitats. In their review article, however, Porter and Cornwell (2024) caution that use of mesocosm experiments may lead to incorrect conclusions if benthic and water column processes are decoupled. The authors indicate that significant insight can be obtained when realistic regimes for both water column and bottom turbulence are simulated.

A topic featured in the virtual issue (although not represented in the special issue) is how biota that create surfaces (e.g., macroalgae, aquatic vegetation, corals, bivalves, complex benthic or fouling communities) can themselves generate or enhance small-scale turbulence. These organisms, known as ecosystem engineers, change the hydrodynamic environment and can then feedback or engineer the larger ecosystem response, for example, through enhanced nutrient delivery or reducing damaging physical forces. Other related studies included only in the virtual issue explore how freshwater and marine organisms (e.g., planktonic prey of benthic animals, gametes during spawning, propagules and larvae) and materials (e.g., nutrients, oxygen, wastes) travel between the water column and the benthos through the turbulent benthic boundary layer. The virtual issue also contains studies of mechanisms used by microscopic organisms to navigate in turbulent ambient water flow, as well as research on how turbulent ocean waves can dislodge or prune benthic organisms and alter community structure.

Virtual issues are intended to be living and growing issues that provide a useful entry point for, and rich variety of, papers on a particular topic. With this special issue and its accompanying virtual issue, we hope that we have created a living and growing resource for aquatic scientists who study the effects of turbulence on individuals and groups of organisms (including influences on the interactions among species), and the generation of turbulence by the organisms themselves. Thus, we encourage authors to let us know if they think their past or current submissions align with a particular theme, so they can be added to the issue when published, in addition to featuring in the regular published issue.

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湍流水域中的生命:不稳定的生物群-水流跨尺度相互作用
水生生物产生并受制于过多的物理力,这些力最终与它们所居住的水体的运动有关。特别是,湍流使生物体在大范围的空间尺度上暴露于快速变化的条件下,从小规模(微观)变化到湖泊、海洋以及河流和河口等相连水体中的中尺度涡流和环流。湍流通常以湍流动能的耗散率(ε)为特征,在湖泊中约为6个数量级,在海洋中约为9个数量级。湍流运动的强度还控制着水生环境中关键特性的转移,以及跨越远洋-底栖生物和水-空气边界的通量。现代实验室设施已经允许对湍流条件进行仔细控制,而现场仪器和处理技术的进步也改进了湍流的表征。结合起来,这些新功能为物理和生物或地球化学过程之间的联系提供了新的见解。本期《湖泊与海洋学》特刊探讨了生物在不同长度和时间尺度上如何经历和应对湍流,以及对个体行为的影响如何影响生态系统尺度的反应。本期的贡献增加了这一领域知识的广度。这种广度也在https://aslopubs.onlinelibrary.wiley.com/doi/toc/10.1002/(ISSN)1939-5590.life-turbulent-waters的在线虚拟问题中得到了展示。这期虚拟期刊还包括许多来自湖沼学和海洋学:流体和环境的论文,旨在作为一个活生生的、不断增长的流动生物群研究汇编,展示了从20世纪60年代到现在的手稿,从20世纪90年代初开始,数量稳步增加。我们强调的是流动-生物群相互作用方面的进展,而不是在《湖沼学和海洋学》上发表的关于湍流物理方面和湍流通量对水体影响的大量开创性论文。虽然特刊中的论文涵盖了广泛的主题,但仍然出现了几个关键主题。一些新的贡献集中在大多数海洋浮游生物对不同空间尺度湍流运动的行为或生态生理反应上。然而,有几项研究表明,淡水浮游动物与海洋浮游动物相比,既表现出相似的反应,又表现出截然不同的反应。Du Gurung等人(2024)研究了淡水大水蚤(Daphnia magna)的游泳行为如何对多种刺激做出反应。研究人员将水蚤暴露于模拟大型Langmuir循环细胞(10−7 &lt; ε &lt; 10−5 m2 s−3)的水动力条件变化、光照和与油接触等环境中,这些环境会影响水蚤的游泳能力。水蚤聚集在“金发姑娘”区域——流速比静止的水快,但比典型的游泳速度慢,这与海洋浮游动物的观察结果相似。相反,Ruszczyk et al.(2024)发现淡水桡足动物Hesperodiaptomus shoshone对湍流的游泳反应与海洋桡足动物不同。他们的实验室实验用伯格涡仪模拟小尺度耗散涡流,检验了赫斯perodiaptomus对湍流的反应。结果显示,在所有湍流水平下,雄性和雌性桡足类的游泳轨迹都是线性的,这与海洋物种(Acartia tonsa, Temora longicornis和Calanus finmarchicus)的螺旋游泳轨迹形成对比。作者提出了几种可能的解释,包括集群排列的差异、生态位的差异以及淡水池塘环境中有限的混合。其他的研究集中在湍流涡度的一个孤立成分上。Goulet等人(2024)研究了暴露于涡量是否会影响淡水大水蚤(Daphnia magna)游泳和摄食行为的相互交织的反应。他们发现,藻类的清除率随着涡度的小而增加,但随着涡度的增加而下降。在其他淡水和海洋生物中也发现了这种对水动力强迫的斜坡状或单峰进食反应。Goulet等人(2024)认为水蚤正常的跳-沉游泳能力也受到涡度的影响,涡度减少了水蚤的跳数和它们的定向能力。对涡度的游动响应可以解释淡水水蚤的摄食响应,但这与海洋桡足类(a.t onsa)对涡度的响应缺乏形成对比,这可能是由于后者的游动能力更强。 上述研究表明,利用实验室研究揭示水动力学与生物行为和生态生理学之间的关系具有优势,这在自然界中是难以测量的。然而,这些研究也表明,需要使用反映自然的分类群的多样性来检查这些关系,而不是依赖于有限数量的模型系统。此外,这些研究还提出了许多关于这些行为和生态生理学在营养水平内和跨营养水平的级联影响的问题。我们注意到,在特刊的几篇论文中讨论的一个关键因素是,确保实验室实验与生态学相关的重要性,以及在模拟该领域所研究的生物体遇到的流动、剪切和涡度的空间和时间波动时,实验提供准确表示的重要性。事实上,正如弗兰克斯和因曼(2024)所提出的那样,这种担忧也提出了关于选择合适的湍流条件描述符的问题。他们认为湍流动能的耗散率(ε)不能捕捉浮游生物个体尺度上湍流剪切的瞬时空间结构信息。他们建议使用一种统计方法,利用微观运动的概率分布作为未来的一种潜在方法。虚拟问题和专题问题中的另一个关键主题可以大致描述为大尺度湍流特征对(1)与生物体生存和生态生理过程相关的物质以及(2)生物体本身的时空分布施加的控制。Sato等人(2024)通过实地和建模研究揭示了海葵鱼类幼虫的海岸线类型、水动力机制和扩散模式之间的关系。他们的分析提供了令人惊讶的结果,即半封闭海湾比开放海岸表现出更低的本地保留率和自我招募。更仔细的研究表明,当地的地形特征驱动了跨海岸的流动,控制了扩散模式,而不是海岸线形状。许多不同的性状(从扩散到代谢性状)都间接受到湍流动力学的影响。在亚马逊淡水溪流系统中,Machado-Silva等人(2024)探索了水动力制度对淡水中暗碳固定的影响,这是一个尚未得到充分研究的过程。研究发现,水体和凋落物中的暗碳固定速率与异养产量相似,但低于沉积物中的暗碳固定速率。相对于淡水系统,水流的速率也更大,尽管湍流没有测量到,但结果强调了在淡水系统中进一步研究这一过程的必要性。湍流也会影响水柱和底栖生物栖息地之间的物质通量。然而,Porter和Cornwell(2024)在他们的综述文章中警告说,如果底栖生物和水柱过程分离,使用中生态实验可能会导致不正确的结论。作者指出,当模拟水柱和底部湍流的实际情况时,可以获得重要的见解。虚拟特刊中的一个专题(尽管特刊中没有介绍)是创造表面的生物群(如大型藻类、水生植被、珊瑚、双壳类、复杂底栖生物或污染群落)如何自身产生或增强小规模湍流。这些生物被称为生态系统工程师,它们改变水动力环境,然后可以反馈或设计更大的生态系统反应,例如,通过增强营养输送或减少破坏性的物理力量。其他相关研究仅包括在虚拟问题中,探讨淡水和海洋生物(例如,底栖动物的浮游猎物,产卵期间的配子,繁殖体和幼虫)和物质(例如,营养物质,氧气,废物)如何通过湍流底栖边界层在水柱和底栖动物之间移动。虚拟问题还包括微观生物在湍流环境水流中导航的机制研究,以及湍流海浪如何移动或修剪底栖生物并改变群落结构的研究。虚拟问题旨在成为有生命的和不断增长的问题,为特定主题的论文提供有用的切入点和丰富的多样性。通过本期特刊及其附带的虚拟刊,我们希望为研究湍流对个体和生物群体的影响(包括对物种之间相互作用的影响)以及生物本身产生湍流的水生科学家创造一个活生生的和不断增长的资源。 因此,我们鼓励作者告诉我们,如果他们认为他们过去或现在的提交符合特定的主题,这样他们就可以在出版时被添加到问题中,除了在常规出版的问题中出现。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Limnology and Oceanography
Limnology and Oceanography 地学-海洋学
CiteScore
8.80
自引率
6.70%
发文量
254
审稿时长
3 months
期刊介绍: Limnology and Oceanography (L&O; print ISSN 0024-3590, online ISSN 1939-5590) publishes original articles, including scholarly reviews, about all aspects of limnology and oceanography. The journal''s unifying theme is the understanding of aquatic systems. Submissions are judged on the originality of their data, interpretations, and ideas, and on the degree to which they can be generalized beyond the particular aquatic system examined. Laboratory and modeling studies must demonstrate relevance to field environments; typically this means that they are bolstered by substantial "real-world" data. Few purely theoretical or purely empirical papers are accepted for review.
期刊最新文献
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