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Genes involved in carbon, nitrogen, and sulfur cycling in an important estuarine ecosystem show coherent shifts in response to changes in environmental conditions 在一个重要的河口生态系统中,参与碳、氮和硫循环的基因随着环境条件的变化而发生一致的变化
IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2024-11-18 DOI: 10.1002/lno.12731
Sarah Pacocha Preheim, Shaina Morris, Yue Zhang, Chris Holder, Keith Arora‐Williams, Paul Gensbigler, Amanda Hinton, Rui Jin, Marie‐Aude Pradal, Morgan Buchanan, Anand Gnanadesikan
While metagenomics can provide insight into microbial community metabolic potential, understanding factors that influence gene abundance is necessary to maximize the information gained from this analysis. Gene abundances are influenced by chemical or physical conditions along with other factors, such as copy number variation between taxa, methodological biases, or issues associated with identification and classification. Here, we identify major drivers of spatiotemporal shifts in microbial gene relative abundance from multiple months, sites, and depths within Chesapeake Bay in 2017 using shotgun metagenomics. We compared changes in relative abundance of key genes for bacterial photosynthesis, nitrogen, and sulfur metabolism with each other and measured environmental variables. Major drivers of differences in key metabolic gene abundances are associated with environmental variables that largely change with depth and season (e.g., temperature, oxygen, phosphate). For sulfur oxidation, bacterial photosynthesis, and denitrification, genes within each process are generally significantly correlated with each other and with several environmental variables. For other processes, such as nitrification, nitrogen fixation, and dissimilatory nitrate reduction to ammonium, genes that encode enzymes within the same pathway are not well correlated. The lack of correlation typically results from differences in identified taxa carrying these genes, suggesting modular pathway structure, methodological errors, or discrepancies in gene copy number between taxonomic groups. To be suitable indicators of biogeochemical processes for models, genes or pathways should be strongly correlated with environmental variables and specific to and inclusive of all taxa mediating the associated process.
虽然元基因组学可以让人们深入了解微生物群落的代谢潜力,但要想最大限度地利用这一分析所获得的信息,就必须了解影响基因丰度的因素。基因丰度受到化学或物理条件以及其他因素的影响,例如类群之间的拷贝数差异、方法偏差或与鉴定和分类相关的问题。在此,我们利用霰弹枪元基因组学确定了 2017 年切萨皮克湾内多个月份、地点和深度的微生物基因相对丰度时空变化的主要驱动因素。我们比较了细菌光合作用、氮和硫代谢关键基因相对丰度的变化,并测量了环境变量。关键代谢基因丰度差异的主要驱动因素与环境变量有关,而环境变量主要随深度和季节(如温度、氧气、磷酸盐)而变化。在硫氧化、细菌光合作用和反硝化过程中,每个过程中的基因之间以及与几个环境变量之间一般都有显著的相关性。至于其他过程,如硝化、固氮和将硝酸盐还原成氨的异氨作用,同一途径中编码酶的基因之间的相关性不强。缺乏相关性的典型原因是携带这些基因的已识别类群存在差异,这表明存在模块化途径结构、方法错误或类群间基因拷贝数的差异。要成为生物地球化学过程模型的合适指标,基因或通路应与环境变量密切相关,并对所有介导相关过程的类群具有特异性和包容性。
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引用次数: 0
Diel dissolved organic matter patterns reflect spatiotemporally varying sources and transformations along an intermittent stream 昼夜溶解有机物模式反映了一条间歇性溪流沿岸时空变化的来源和转化情况
IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2024-11-18 DOI: 10.1002/lno.12695
Rebecca L. Hale, Sarah E. Godsey, Jenna M. Dohman, Sara R. Warix
Stream dissolved organic matter (DOM) is a globally important carbon flux and a locally important control on stream ecosystems, and therefore understanding controls on stream DOM fluxes and dynamics is crucial at both local and global scales. However, attributing process controls is challenging because both hydrological and biological controls on DOM are integrated and may vary over time and throughout stream networks. Our objective was to assess the patterns and corresponding controls of diel DOM cycles through a seasonal flow recession by using reach‐scale in situ sensors in a non‐perennial stream network. We identified five characteristic diel variations in DOM with differing phase and amplitude. During snowmelt flows, diel variations in DOM were consistent among sites and reflected diel flowpath shifts and photodegradation. Evapotranspiration‐driven diel stage oscillations emerged at two upstream sites, shaping diel DOM patterns indirectly, by creating conditions for instream DOM processing. At a spring‐fed site, minimal diel variation was observed throughout the summer whereas at an intermittent reach, daily drying and rewetting created biogeochemical hot moments. This research demonstrates that controls on DOM vary over time and space, even in close proximity, generating asynchronous fDOM patterns during low flows, illuminating shifts in biogeochemical processes and flowpaths.
溪流溶解有机物(DOM)是全球重要的碳通量,也是对溪流生态系统的局部重要控制,因此了解溪流溶解有机物通量和动态的控制在局部和全球尺度上都至关重要。然而,由于水文和生物对 DOM 的控制是综合的,并且可能随时间和整个溪流网络而变化,因此对过程控制的归因具有挑战性。我们的目标是在一个非常年性溪流网络中,利用可达尺度的原位传感器,通过季节性水流衰退来评估昼夜 DOM 循环的模式和相应的控制。我们确定了 DOM 的五种特征性昼夜变化,其相位和振幅各不相同。在融雪流期间,不同地点 DOM 的昼夜变化是一致的,反映了昼夜流径变化和光降解。两个上游观测点出现了蒸散驱动的昼夜阶段振荡,通过为内流 DOM 处理创造条件,间接影响了昼夜 DOM 模式。在一个泉水哺育的地点,整个夏季的昼夜变化极小,而在一个间歇性河段,每天的干燥和复湿产生了生物地球化学热点。这项研究表明,对 DOM 的控制随着时间和空间的变化而变化,即使是在很近的距离内,也会在低流量时产生不同步的 fDOM 模式,从而揭示生物地球化学过程和水流路径的变化。
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引用次数: 0
Advancing an integrated understanding of land–ocean connections in shaping the marine ecosystems of coastal temperate rainforest ecoregions 推进对塑造沿海温带雨林生态区海洋生态系统的陆地-海洋联系的综合理解
IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2024-11-18 DOI: 10.1002/lno.12724
Brian P. V. Hunt, Simone Alin, Allison Bidlack, Heida L. Diefenderfer, Jennifer M. Jackson, Colleen T. E. Kellogg, Peter Kiffney, Kyra A. St. Pierre, Eddy Carmack, William C. Floyd, Eran Hood, Alexander R. Horner‐Devine, Colin Levings, Cristian A. Vargas
Land and ocean ecosystems are strongly connected and mutually interactive. As climate changes and other anthropogenic stressors intensify, the complex pathways that link these systems will strengthen or weaken in ways that are currently beyond reliable prediction. In this review we offer a framework of land–ocean couplings and their role in shaping marine ecosystems in coastal temperate rainforest (CTR) ecoregions, where high freshwater and materials flux result in particularly strong land–ocean connections. Using the largest contiguous expanse of CTR on Earth—the Northeast Pacific CTR (NPCTR)—as a case study, we integrate current understanding of the spatial and temporal scales of interacting processes across the land–ocean continuum, and examine how these processes structure and are defining features of marine ecosystems from nearshore to offshore domains. We look ahead to the potential effects of climate and other anthropogenic changes on the coupled land–ocean meta‐ecosystem. Finally, we review key data gaps and provide research recommendations for an integrated, transdisciplinary approach with the intent to guide future evaluations of and management recommendations for ongoing impacts to marine ecosystems of the NPCTR and other CTRs globally. In the light of extreme events including heatwaves, fire, and flooding, which are occurring almost annually, this integrative agenda is not only necessary but urgent.
陆地和海洋生态系统紧密相连、相互影响。随着气候变化和其他人为压力的加剧,连接这些系统的复杂路径将以目前无法可靠预测的方式加强或削弱。在这篇综述中,我们提供了一个陆地-海洋耦合及其在塑造沿海温带雨林(CTR)生态区海洋生态系统中的作用的框架。我们以地球上最大的沿海温带雨林生态区--东北太平洋沿海温带雨林生态区(NPCTR)--为案例,整合了目前对整个陆地-海洋连续统一体中相互作用过程的时空尺度的理解,并考察了这些过程是如何构建从近岸到离岸领域的海洋生态系统并使其具有决定性特征的。我们展望了气候和其他人为变化对陆地-海洋耦合元生态系统的潜在影响。最后,我们回顾了主要的数据缺口,并为综合、跨学科方法提供了研究建议,旨在指导未来对北太平洋热带雨林研究区和全球其他热带雨林研究区海洋生态系统的持续影响进行评估并提出管理建议。鉴于热浪、火灾和洪水等极端事件几乎每年都会发生,这一综合议程不仅必要,而且紧迫。
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引用次数: 0
Life in turbulent waters: unsteady biota–flow interactions across scales 湍流水域中的生命:不稳定的生物群-水流跨尺度相互作用
IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2024-11-18 DOI: 10.1002/lno.12732
Julia C. Mullarney, Josef Daniel Ackerman, Steeve Comeau, Mimi A. R. Koehl, Elisa Schaum, Rafael O. Tinoco, Danielle J. Wain, Hidekatsu Yamazaki
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引用次数: 0
High‐frequency dynamics of bottom dissolved oxygen in temperate shelf seas: The joint role of tidal mixing and sediment oxygen demand 温带大陆架海域海底溶解氧的高频动态:潮汐混合和沉积物需氧量的共同作用
IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2024-11-15 DOI: 10.1002/lno.12733
Wenfan Wu, Changyuan Song, Yicheng Chen, Fangguo Zhai, Zizhou Liu, Cong Liu, Yanzhen Gu, Peiliang Li
Dissolved oxygen (DO) in the bottom layer is essential for benthic organisms, and its temporal variations are widely concerned. However, previous studies have primarily focused on the long‐term variations of bottom DO, leaving its high‐frequency (HF) dynamics inadequately understood. This study addresses this gap by utilizing two seafloor monitoring systems that provide 3‐year‐long HF records in a typical temperate shelf sea, the Bohai Sea, China. During the stratified period each year, bottom DO exhibits notable HF fluctuations superimposed on its seasonal cycle. These HF signals originate from tide‐induced vertical mixing, showing peaks at various tidal frequencies. Notably, significant shallow‐water tidal signals are observed in bottom DO due to the frequency doubling of semi‐diurnal and diurnal tidal currents. Moreover, bottom DO demonstrates strongly asymmetric responses to tidal mixing on HF time scales. To be specific, the bottom DO increases with the intensity of tidal mixing, with this process being exceptionally rapid under conditions of weak tidal mixing. The underlying cause of this asymmetry is the markedly stronger vertical DO gradient near the seabed due to sediment oxygen demand. A process‐oriented biological model successfully reproduced observational features, further supporting our theoretical inference. These findings highlight the joint role of tidal mixing and sediment oxygen demand in modulating the HF dynamics of bottom DO in temperate shelf seas, underscoring their significance for the refined prediction of bottom DO in the future.
底层溶解氧(DO)对底栖生物至关重要,其时间变化受到广泛关注。然而,以往的研究主要关注底层溶解氧的长期变化,对其高频(HF)动态了解不足。本研究利用两个海底监测系统,在典型的温带大陆架海域(中国渤海)提供了长达 3 年的高频记录,弥补了这一空白。在每年的分层期,海底溶解氧在其季节周期上呈现出明显的高频波动。这些高频信号源于潮汐引起的垂直混合,在不同的潮汐频率下呈现峰值。值得注意的是,由于半日潮和日潮的频率加倍,在底层溶解氧中观测到了明显的浅水潮汐信号。此外,底层溶解氧在高频时间尺度上对潮汐混合表现出强烈的不对称响应。具体来说,底层溶解氧随潮汐混合强度的增加而增加,在潮汐混合较弱的条件下,这一过程异常迅速。造成这种不对称现象的根本原因是,由于沉积物的需氧量,海底附近的溶解氧垂直梯度明显增大。以过程为导向的生物模型成功地再现了观测特征,进一步支持了我们的理论推断。这些发现凸显了潮汐混合和沉积物需氧量在调节温带陆架海海底溶解氧高频动态中的共同作用,强调了它们对未来海底溶解氧精细预测的重要意义。
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引用次数: 0
Exposure, body size, and zooplankton overland dispersal capacity 暴露、体型和浮游动物的陆上扩散能力
IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2024-11-15 DOI: 10.1002/lno.12735
Donn K. Branstrator, Rebecca A. Smith
The dormant life stages of freshwater zooplankton are generally resistant to environmental exposure, and this facilitates their overland dispersal. However, environmental exposure and overland dispersal are less well studied for the active life stages of freshwater zooplankton. To characterize empirically the longevity of active life stages out of water, survival time to air exposure was measured in the laboratory for seven cladoceran species using heartbeat cessation to signify survival time. Survival time increased with body dry weight with an allometric scaling exponent near 2/3 in both a single‐species model with Daphnia mendotae and a multispecies model with five bivalved species that included Bosmina longirostris, Acroperus harpae, Ceriodaphnia dubia, D. mendotae, and Daphnia magna. The 2/3 scaling exponent is consistent with Euclidean geometry and points to water loss across the surface of a spherical body as the cause. Survival time of a 6th species, Holopedium gibberum, was 618% longer than predictions based on the multispecies model, likely due to its gelatinous mantle. Survival time of a 7th species, Bythotrephes cederströmii, was 58–83% shorter than predictions based on the multispecies model, likely due to its lack of a bivalve carapace. The longest survival time of an individual was 225.4 min (H. gibberum). Results suggest that at landscape scales, body size could be a proxy for the geographic extent of overland dispersal capacity of the active life stage.
淡水浮游动物的休眠生命阶段一般对环境暴露具有抵抗力,这有利于它们的陆上扩散。然而,对于淡水浮游动物的活动生命阶段,环境暴露和陆上扩散的研究较少。为了从经验上描述活跃生命阶段在水外的寿命,我们在实验室测量了七种浮游动物暴露在空气中的存活时间,用心跳停止来表示存活时间。在以孟氏水蚤为对象的单物种模型和以五种双壳类动物为对象的多物种模型中,存活时间都随着身体干重的增加而增加,其指数接近 2/3。2/3 的缩放指数与欧几里得几何学相一致,表明水在球体表面的流失是其原因。第 6 个物种 Holopedium gibberum 的存活时间比根据多物种模型预测的时间长 618%,这可能是由于它的胶状外壳。第 7 个物种 Bythotrephes cederströmii 的存活时间比根据多物种模型预测的时间短 58-83%,这可能是由于它没有双壳甲壳。个体的最长存活时间为 225.4 分钟(H. gibberum)。结果表明,在景观尺度上,体型可以代表活跃生命阶段陆上扩散能力的地理范围。
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IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2023-09-25 DOI: 10.1002/lno.12136
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IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2023-09-25 DOI: 10.1002/lno.12135
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IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2023-09-25 DOI: 10.1002/lno.12137
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IF 4.5 1区 地球科学 Q1 LIMNOLOGY Pub Date : 2023-09-25 DOI: 10.1002/lno.12138
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Limnology and Oceanography
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