Automated potential energy surface development and quasi-classical dynamics for the F- + SiH3I system.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL Journal of Chemical Physics Pub Date : 2024-11-21 DOI:10.1063/5.0238366
Balázs J Molnár, Attila Á Dékány, Gábor Czakó
{"title":"Automated potential energy surface development and quasi-classical dynamics for the F- + SiH3I system.","authors":"Balázs J Molnár, Attila Á Dékány, Gábor Czakó","doi":"10.1063/5.0238366","DOIUrl":null,"url":null,"abstract":"<p><p>We report a potential energy surface (PES) development for the F- + SiH3I system to study its gas-phase reactions through quasi-classical dynamics simulations. The PES is represented by a full-dimensional permutationally invariant polynomial fitted to composite coupled cluster energy points obtained at the ManyHF-[CCSD-F12b + BCCD(T) - BCCD]/aug-cc-pVTZ(-PP) level of theory. The development was automated by Robosurfer, which samples the configurational space, manages ab initio calculations, and iteratively extends the fitting set. When selecting the ab initio method, we address two types of electronic structure calculation issues: first, the gold standard CCSD(T)-F12b is prone to occasional breakdown due to the perturbative (T) contribution, whereas CCSD-F12b + BCCD(T) - BCCD, with the Brueckner (T) term, is more robust; second, the underlying Hartree-Fock calculation may not always converge to the global minimum, resulting in highly erroneous energies. To mitigate this, we employed ManyHF, configuring the Hartree-Fock calculations with multiple initial guess orbitals and selecting the solution with the lowest energy. According to the simulations, the title system exhibits exceptionally high and diverse reactivity. We observe two dominant product formations: SN2 and proton abstraction. Moreover, SiH2F- + HI, SiHFI- + H2, SiH2FI + H-, SiH2 + FHI-, SiH2 + HF + I-, and SiHF + H2 + I- formations are found at lower probabilities. We differentiated inversion and retention for SN2, both being significant throughout the entire collision energy range. Opacity- and excitation functions are reported, and the details of the atomistic dynamics are visually examined via trajectory animations.</p>","PeriodicalId":15313,"journal":{"name":"Journal of Chemical Physics","volume":"161 19","pages":""},"PeriodicalIF":3.1000,"publicationDate":"2024-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Physics","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1063/5.0238366","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

We report a potential energy surface (PES) development for the F- + SiH3I system to study its gas-phase reactions through quasi-classical dynamics simulations. The PES is represented by a full-dimensional permutationally invariant polynomial fitted to composite coupled cluster energy points obtained at the ManyHF-[CCSD-F12b + BCCD(T) - BCCD]/aug-cc-pVTZ(-PP) level of theory. The development was automated by Robosurfer, which samples the configurational space, manages ab initio calculations, and iteratively extends the fitting set. When selecting the ab initio method, we address two types of electronic structure calculation issues: first, the gold standard CCSD(T)-F12b is prone to occasional breakdown due to the perturbative (T) contribution, whereas CCSD-F12b + BCCD(T) - BCCD, with the Brueckner (T) term, is more robust; second, the underlying Hartree-Fock calculation may not always converge to the global minimum, resulting in highly erroneous energies. To mitigate this, we employed ManyHF, configuring the Hartree-Fock calculations with multiple initial guess orbitals and selecting the solution with the lowest energy. According to the simulations, the title system exhibits exceptionally high and diverse reactivity. We observe two dominant product formations: SN2 and proton abstraction. Moreover, SiH2F- + HI, SiHFI- + H2, SiH2FI + H-, SiH2 + FHI-, SiH2 + HF + I-, and SiHF + H2 + I- formations are found at lower probabilities. We differentiated inversion and retention for SN2, both being significant throughout the entire collision energy range. Opacity- and excitation functions are reported, and the details of the atomistic dynamics are visually examined via trajectory animations.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
F- + SiH3I 系统的自动势能面开发和准经典动力学。
我们报告了 F- + SiH3I 系统的势能面(PES)开发情况,以通过准经典动力学模拟研究其气相反应。该势能面由一个全维包覆不变多项式表示,该多项式与在 ManyHF-[CCSD-F12b + BCCD(T) - BCCD]/aug-cc-pVTZ(-PP) 理论水平下获得的复合耦合簇能点相拟合。开发工作由 Robosurfer 自动完成,它对构型空间进行采样,管理 ab initio 计算,并迭代扩展拟合集。在选择 ab initio 方法时,我们解决了两类电子结构计算问题:首先,黄金标准 CCSD(T)-F12b 容易因扰动(T)贡献而偶尔崩溃,而带有 Brueckner (T) 项的 CCSD-F12b + BCCD(T) - BCCD 则更加稳健;其次,底层 Hartree-Fock 计算可能并不总是收敛到全局最小值,从而导致极度错误的能量。为了缓解这一问题,我们采用了 ManyHF 方法,用多个初始猜测轨道配置哈特里-福克计算,并选择能量最低的解。模拟结果表明,标题系统具有极高的反应活性和多样性。我们观察到两种主要的产物形式:SN2 和质子抽取。此外,SiH2F- + HI、SiHFI- + H2、SiH2FI + H-、SiH2 + FHI-、SiH2 + HF + I-和 SiHF + H2 + I-的形成概率也较低。我们对 SN2 的反转和保留进行了区分,两者在整个碰撞能量范围内都很重要。我们报告了不透明度和激发函数,并通过轨迹动画直观地研究了原子动力学的细节。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
期刊最新文献
Assessing solvated electron uptake in low-temperature plasma-exposed solutions as a pathway to quantifying plasma electrons. Comparison of intermediate-range order in GeO2 glass: Molecular dynamics using machine-learning interatomic potential vs reverse Monte Carlo fitting to experimental data. Effect of para-substituents on NC bonding of aryl isocyanide molecules adsorbed on metal surfaces studied by sum frequency generation (SFG) spectroscopy. Encapsulation-induced hypsochromic shift of emission properties from a cationic Ir(III) complex in a hydrogen-bonded organic cage: A theoretical study. Enhanced decoupling of conductivity relaxation from structural relaxation in non-stoichiometric protic ionic liquids involving triflic acid and 2-aminoethyl hydrogen sulfate.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1