3T-VASP: fast ab-initio electrochemical reactor via multi-scale gradient energy minimization

IF 14.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Nature Communications Pub Date : 2024-11-22 DOI:10.1038/s41467-024-54453-1
Jonathan P. Mailoa, Xin Li, Shengyu Zhang
{"title":"3T-VASP: fast ab-initio electrochemical reactor via multi-scale gradient energy minimization","authors":"Jonathan P. Mailoa, Xin Li, Shengyu Zhang","doi":"10.1038/s41467-024-54453-1","DOIUrl":null,"url":null,"abstract":"<p>Ab-initio methods such as density functional theory (DFT) is useful for fundamental atomistic-level study and is widely used across many scientific fields, including for the discovery of electrochemical reaction byproducts. However, many DFT steps may be needed to discover rare electrochemical reaction byproducts, which limits DFT’s scalability. In this work, we demonstrate that it is possible to generate many elementary electrochemical reaction byproducts in-silico using just a small number of ab-initio energy minimization steps if it is done in a multi-scale manner, such as via previously reported tiered tensor transform (3T) method. We first demonstrate the algorithm through a simple example of a complex floppy organic molecule passivator binding onto perovskite solar cell surface defect site. We then demonstrate more complex examples by generating hundreds of electrochemical reaction byproducts in lithium-ion battery liquid electrolyte (many are verified in previous experimental studies), with most trajectories completed within 50–100 DFT steps as opposed to more than 10,000 steps typically utilized in an ab-initio molecular dynamics trajectory. This approach requires no machine learning training data generation and can be directly applied on any new chemistries, making it suitable for ab-initio elementary chemical reaction byproduct investigation when temperature dependence is not required.</p>","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":"42 1","pages":""},"PeriodicalIF":14.7000,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Nature Communications","FirstCategoryId":"103","ListUrlMain":"https://doi.org/10.1038/s41467-024-54453-1","RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0

Abstract

Ab-initio methods such as density functional theory (DFT) is useful for fundamental atomistic-level study and is widely used across many scientific fields, including for the discovery of electrochemical reaction byproducts. However, many DFT steps may be needed to discover rare electrochemical reaction byproducts, which limits DFT’s scalability. In this work, we demonstrate that it is possible to generate many elementary electrochemical reaction byproducts in-silico using just a small number of ab-initio energy minimization steps if it is done in a multi-scale manner, such as via previously reported tiered tensor transform (3T) method. We first demonstrate the algorithm through a simple example of a complex floppy organic molecule passivator binding onto perovskite solar cell surface defect site. We then demonstrate more complex examples by generating hundreds of electrochemical reaction byproducts in lithium-ion battery liquid electrolyte (many are verified in previous experimental studies), with most trajectories completed within 50–100 DFT steps as opposed to more than 10,000 steps typically utilized in an ab-initio molecular dynamics trajectory. This approach requires no machine learning training data generation and can be directly applied on any new chemistries, making it suitable for ab-initio elementary chemical reaction byproduct investigation when temperature dependence is not required.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
3T-VASP:通过多尺度梯度能量最小化实现快速非原位电化学反应器
密度泛函理论(DFT)等无源方法对原子水平的基础研究非常有用,被广泛应用于许多科学领域,包括发现电化学反应副产物。然而,要发现罕见的电化学反应副产物可能需要许多 DFT 步骤,这限制了 DFT 的可扩展性。在这项工作中,我们证明了如果采用多尺度方式,例如之前报道过的分层张量变换 (3T) 方法,只需少量的非原位能量最小化步骤,就有可能在室内生成许多基本的电化学反应副产物。我们首先通过一个简单的例子演示了该算法,即复杂的软性有机分子钝化剂与过氧化物太阳能电池表面缺陷部位的结合。然后,我们通过在锂离子电池液态电解质中生成数百个电化学反应副产物(许多副产物已在先前的实验研究中得到验证)来演示更复杂的示例,大多数轨迹在 50-100 DFT 步内完成,而非原位分子动力学轨迹通常需要 10,000 多步。这种方法无需生成机器学习训练数据,可直接应用于任何新化学物质,因此适用于不需要温度依赖性的非原位基本化学反应副产物研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Nature Communications
Nature Communications Biological Science Disciplines-
CiteScore
24.90
自引率
2.40%
发文量
6928
审稿时长
3.7 months
期刊介绍: Nature Communications, an open-access journal, publishes high-quality research spanning all areas of the natural sciences. Papers featured in the journal showcase significant advances relevant to specialists in each respective field. With a 2-year impact factor of 16.6 (2022) and a median time of 8 days from submission to the first editorial decision, Nature Communications is committed to rapid dissemination of research findings. As a multidisciplinary journal, it welcomes contributions from biological, health, physical, chemical, Earth, social, mathematical, applied, and engineering sciences, aiming to highlight important breakthroughs within each domain.
期刊最新文献
Whole-cell multi-target single-molecule super-resolution imaging in 3D with microfluidics and a single-objective tilted light sheet Interstellar formation of lactaldehyde, a key intermediate in the methylglyoxal pathway Zfp260 choreographs the early stage osteo-lineage commitment of skeletal stem cells Bacterial single-cell RNA sequencing captures biofilm transcriptional heterogeneity and differential responses to immune pressure Structural insight into the distinct regulatory mechanism of the HEPN–MNT toxin-antitoxin system in Legionella pneumophila
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1