Effects of hypoxia on survival, apoptosis, and the transcriptome of the Chinese yellow pond turtle (Mauremys mutica).

IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Gene Pub Date : 2024-11-23 DOI:10.1016/j.gene.2024.149120
Lingjing Wei, Congyan Yu, Shan Xiao, Kang Liu, Yudian Lu, Baojiang Gan, Peng Zhu, Sheng Zhang
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Abstract

Mauremys mutica is a widely cultured pond turtle in China that can hold its breath underwater for up to 7 h. However, the adaptive mechanism of this hypoxia-resistant phenotype remains unknown. In the present study, no M. mutica died until 6 h of hypoxic stress. Inflammation was observed in the lungs of dead individuals along with a lung cell apoptosis rate of 12.3% in the death group, which was about six times that of the survival group. Transcriptome sequencing produced 379,659,748 clean reads, and 38,981 genes were obtained. A total of 1566, 1555 and 756 differentially expressed genes (DEGs) were detected between the survival group and the death group, the survival group and the control group, and the death group and the control group, respectively. And the DEGs were enriched in the inflammation, apoptosis, sugar transport, antioxidant, fructose, and mannose metabolism, arginine and proline metabolism, glycosaminoglycan biosynthesis, P53, and MAPK signaling pathways. This study offers new insight into the molecular mechanisms occurring in the lungs of M. mutica during acute hypoxia, which may facilitate genetic selection for hypoxia-resistant lines inM. mutica.

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缺氧对中华鳖存活、凋亡和转录组的影响
Mauremys mutica是中国广泛养殖的一种池塘龟,它能在水下憋气长达7小时。然而,这种耐缺氧表型的适应机制尚不清楚。在本研究中,在缺氧应激 6 小时之前,没有一只鳖死亡。在死亡个体的肺部观察到炎症,死亡组的肺细胞凋亡率为 12.3%,约为存活组的六倍。转录组测序产生了 379659748 个纯净读数,获得了 38981 个基因。在存活组与死亡组、存活组与对照组、死亡组与对照组之间分别检测到了1566、1555和756个差异表达基因(DEGs)。这些差异表达基因富集于炎症、细胞凋亡、糖转运、抗氧化、果糖和甘露糖代谢、精氨酸和脯氨酸代谢、糖胺聚糖生物合成、P53和MAPK信号通路。这项研究提供了对急性缺氧期间发生在M. mutica肺部的分子机制的新见解,这可能有助于M. mutica耐缺氧品系的遗传选择。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Gene
Gene 生物-遗传学
CiteScore
6.10
自引率
2.90%
发文量
718
审稿时长
42 days
期刊介绍: Gene publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses.
期刊最新文献
Early life lipid overload in Native American Myopathy is phenocopied by stac3 knockout in zebrafish. Corrigendum to "Transcriptome analysis to identify key genes involved in terpenoid and rosmarinic acid biosynthesis in lemon balm (Melissa officinalis)" [Gene 773 (2021) 145417]. MiR-433 inhibits cell invasion of glioblastoma via direct targeting TRPM8 based on bioinformatic analysis and experimental validation Effects of hypoxia on survival, apoptosis, and the transcriptome of the Chinese yellow pond turtle (Mauremys mutica). Corrigendum to "Regulation of cell proliferation and migration in gallbladder cancer by zinc finger X-chromosomal protein" [528(2) (2013) 261-266].
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