Comprehensive evaluation of purine analogues: Cytotoxic and antioxidant activities, enzyme inhibition, DFT insights, and molecular docking analysis

IF 4 2区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Molecular Structure Pub Date : 2024-11-18 DOI:10.1016/j.molstruc.2024.140798
Medine Canakdag , Mehran Feizi-Dehnayebi , Sevgi Kundu , Dicle Sahin , İlhan Özer İlhan , Sadeq K. Alhag , Laila A. Al-Shuraym , Senem Akkoc
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Abstract

This study presents a comprehensive analysis of purine analogues, focusing on their biological evaluations, including antioxidant, cytotoxic activity, and enzyme inhibition, alongside in-depth computational assessments using density functional theory (DFT) and molecular docking. A series of purine analogues were synthesized, characterized, and subjected to antioxidant assays to determine their radical scavenging capabilities, and cytotoxicity was evaluated against various cancer cell lines (A549 and DLD-1) to assess their potential therapeutic efficacy. The experimental findings indicated that certain purine derivatives exhibited significant antioxidant properties and cytotoxic effects, highlighting their potential as bioactive compounds. Furthermore, the synthesized purine analogues showed α-glucosidase enzyme inhibitory activity at all concentrations investigated except molecule 2a. The geometry of compounds was optimized under the DFT/B3LYP/6–311++G (d,p) level of calculation in order to investigate the electronic behaviors. The MEP surface and HOMO-LUMO analysis of compounds were studied to predict the reactive sites for electrophilic and nucleophilic attacks and biological activity and stability. Molecular docking simulations against two distinct protein receptors (PDB ID: 3KJF and 3WZE) to explore their impact on cancer cells, considering the promising cytotoxic activity of compounds.
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全面评估嘌呤类似物:细胞毒性和抗氧化活性、酶抑制作用、DFT 见解和分子对接分析
本研究对嘌呤类似物进行了全面分析,重点关注它们的生物学评价,包括抗氧化性、细胞毒性活性和酶抑制作用,并利用密度泛函理论(DFT)和分子对接进行了深入的计算评估。对一系列嘌呤类似物进行了合成、表征和抗氧化试验,以确定它们的自由基清除能力,并评估了它们对各种癌细胞株(A549 和 DLD-1)的细胞毒性,以评估它们的潜在疗效。实验结果表明,某些嘌呤衍生物具有显著的抗氧化性和细胞毒性作用,凸显了它们作为生物活性化合物的潜力。此外,除分子 2a 外,合成的嘌呤类似物在所有研究浓度下都具有α-葡萄糖苷酶抑制活性。为了研究化合物的电子行为,在 DFT/B3LYP/6-311++G (d,p) 计算水平下对化合物的几何形状进行了优化。研究了化合物的 MEP 表面和 HOMO-LUMO 分析,以预测亲电和亲核攻击的反应位点以及生物活性和稳定性。考虑到化合物具有良好的细胞毒性活性,针对两种不同的蛋白质受体(PDB ID:3KJF 和 3WZE)进行了分子对接模拟,以探讨它们对癌细胞的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Structure
Journal of Molecular Structure 化学-物理化学
CiteScore
7.10
自引率
15.80%
发文量
2384
审稿时长
45 days
期刊介绍: The Journal of Molecular Structure is dedicated to the publication of full-length articles and review papers, providing important new structural information on all types of chemical species including: • Stable and unstable molecules in all types of environments (vapour, molecular beam, liquid, solution, liquid crystal, solid state, matrix-isolated, surface-absorbed etc.) • Chemical intermediates • Molecules in excited states • Biological molecules • Polymers. The methods used may include any combination of spectroscopic and non-spectroscopic techniques, for example: • Infrared spectroscopy (mid, far, near) • Raman spectroscopy and non-linear Raman methods (CARS, etc.) • Electronic absorption spectroscopy • Optical rotatory dispersion and circular dichroism • Fluorescence and phosphorescence techniques • Electron spectroscopies (PES, XPS), EXAFS, etc. • Microwave spectroscopy • Electron diffraction • NMR and ESR spectroscopies • Mössbauer spectroscopy • X-ray crystallography • Charge Density Analyses • Computational Studies (supplementing experimental methods) We encourage publications combining theoretical and experimental approaches. The structural insights gained by the studies should be correlated with the properties, activity and/ or reactivity of the molecule under investigation and the relevance of this molecule and its implications should be discussed.
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