TERTmonitor Efficacy and Performance in Detecting Mutations by Droplet Digital PCR.

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY Genes Pub Date : 2024-10-31 DOI:10.3390/genes15111424
Mafalda Bessa-Gonçalves, João Paulo Brás, Tito Teles Jesus, Hugo Prazeres, Paula Soares, João Vinagre
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Abstract

Background: The screening of TERT promoter (TERTp) mutations is essential in cancer research and diagnostics, due to its prevalence in tumours associated with low self-renewal rates. TERTmonitor is a diagnosis kit primarily designed for real-time qPCR qualitative detection of -124C>T and -146C>T TERTp mutations, which are highly prevalent in several malignancies, particularly in bladder carcinoma.

Objective: This study aims to investigate TERTmonitor performance in droplet digital PCR (ddPCR) in urine samples from bladder cancer patients.

Methods: A total of 45 urine samples were examined by real-time qPCR and ddPCR techniques, and their performances were compared.

Results: TERTmonitor had similar performance in both real-time qPCR and ddPCR platforms. Specifically, the methods exhibited a concordance rate of 95.45% and 90% for -124C>T and -146C>T mutations, respectively. Importantly, an enhanced sensitivity in certain scenarios was exhibited by ddPCR when compared to real-time qPCR, detecting mutations that the latter failed to identify in approximately 4.55% and 10% of the samples for -124C>T and -146C>T mutations, respectively. This enhanced sensitivity of ddPCR was particularly evident in samples with low-frequency mutations.

Conclusions: The findings highlight the usefulness of TERTmonitor for cancer surveillance either in real-time qPCR or ddPCR platforms.

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TERTmonitor 在通过液滴数字 PCR 检测突变方面的功效和性能。
背景:TERT 启动子(TERTp)突变在自我更新率低的肿瘤中很常见,因此筛查 TERT 启动子突变在癌症研究和诊断中至关重要。TERTmonitor是一种诊断试剂盒,主要用于实时qPCR定性检测-124C>T和-146C>T TERTp突变:本研究旨在调查 TERTmonitor 在膀胱癌患者尿样液滴数字 PCR(ddPCR)中的性能:方法:采用实时 qPCR 和 ddPCR 技术检测了 45 份尿液样本,并比较了它们的性能:结果:TERTmonitor 在实时 qPCR 和 ddPCR 平台上的表现相似。具体来说,对于 -124C>T 和 -146C>T 突变,这两种方法的吻合率分别为 95.45% 和 90%。重要的是,与实时 qPCR 相比,ddPCR 在某些情况下表现出更高的灵敏度,在 -124C>T 和 -146C>T 突变中,分别有约 4.55% 和 10% 的样本检测出了后者未能识别的突变。ddPCR 灵敏度的提高在低频突变样本中尤为明显:研究结果凸显了 TERTmonitor 在实时 qPCR 或 ddPCR 平台上用于癌症监测的实用性。
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来源期刊
Genes
Genes GENETICS & HEREDITY-
CiteScore
5.20
自引率
5.70%
发文量
1975
审稿时长
22.94 days
期刊介绍: Genes (ISSN 2073-4425) is an international, peer-reviewed open access journal which provides an advanced forum for studies related to genes, genetics and genomics. It publishes reviews, research articles, communications and technical notes. There is no restriction on the length of the papers and we encourage scientists to publish their results in as much detail as possible.
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