Comparative karyotype analysis provides cytogenetic evidence for the origin of sweetpotato.

IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Chromosome Research Pub Date : 2024-11-28 DOI:10.1007/s10577-024-09758-8
Jianying Sun, Qian Zhang, Meiling Xu, Mengxiao Yan, Xingyu Liu, Jian Sun, Qinghe Cao, Hongxia Wang, Jun Yang, Zongyun Li, Yonghua Han
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Abstract

The origin of hexaploid sweetpotato [Ipomoea batatas (L.) Lam.] remains controversial. Comparative karyotype analysis is particularly useful in determining species relationships and the origin of polyploid species. In previous study, we developed a set of oligo probes and identified all chromosomes of Ipomoea nil, a model diploid Ipomoea species. Here, we found that this set of oligo probes could be used to identify all chromosomes of sweetpotato and its wild relatives with different ploidy. Karyotypes based on individually identified chromosomes were established and the number and position of 5S and 35S rDNA loci were determined for these Ipomoea species. Comparison of their karyotypes revealed distinct variations in the karyotypic parameters. Karyological relationships among these species were revealed by principal coordinate analysis (PCoA) based on six quantitative parameters (x, 2n, TCL, MCA, CVCL and CVCI). These results show that I. trifida is the most closely related diploid species to sweetpotato, and other diploid species could be excluded from consideration as its possible diploid ancestor. In addition, our study also provides cytogenetic evidence for the segmental allopolyploid hypothesis of sweetpotato origin.

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比较核型分析为甘薯的起源提供了细胞遗传学证据。
六倍体甘薯[Ipomoea batatas (L.) Lam.]的起源仍存在争议。比较核型分析在确定物种关系和多倍体物种起源方面特别有用。在之前的研究中,我们开发了一套寡探针,并鉴定了模式二倍体红苕(Ipomoea nil)的所有染色体。在这里,我们发现这组寡聚探针可用于鉴定不同倍性的甘薯及其野生近缘种的所有染色体。根据单独鉴定的染色体建立了核型,并确定了这些红苕物种的 5S 和 35S rDNA 基因座的数量和位置。对它们的核型进行比较后发现,核型参数存在明显差异。基于六个定量参数(x、2n、TCL、MCA、CVCL 和 CVCI)的主坐标分析(PCoA)揭示了这些物种之间的核型关系。这些结果表明,I. trifida 是与甘薯亲缘关系最密切的二倍体物种,可以排除其他二倍体物种作为其二倍体祖先的可能性。此外,我们的研究还为甘薯起源的分段异源多倍体假说提供了细胞遗传学证据。
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来源期刊
Chromosome Research
Chromosome Research 生物-生化与分子生物学
CiteScore
4.70
自引率
3.80%
发文量
31
审稿时长
1 months
期刊介绍: Chromosome Research publishes manuscripts from work based on all organisms and encourages submissions in the following areas including, but not limited, to: · Chromosomes and their linkage to diseases; · Chromosome organization within the nucleus; · Chromatin biology (transcription, non-coding RNA, etc); · Chromosome structure, function and mechanics; · Chromosome and DNA repair; · Epigenetic chromosomal functions (centromeres, telomeres, replication, imprinting, dosage compensation, sex determination, chromosome remodeling); · Architectural/epigenomic organization of the genome; · Functional annotation of the genome; · Functional and comparative genomics in plants and animals; · Karyology studies that help resolve difficult taxonomic problems or that provide clues to fundamental mechanisms of genome and karyotype evolution in plants and animals; · Mitosis and Meiosis; · Cancer cytogenomics.
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