A deep learning model for detecting and classifying multiple marine mammal species from passive acoustic data

IF 7.3 2区 环境科学与生态学 Q1 ECOLOGY Ecological Informatics Pub Date : 2024-12-01 Epub Date: 2024-11-22 DOI:10.1016/j.ecoinf.2024.102906
Quentin Hamard , Minh-Tan Pham , Dorian Cazau , Karine Heerah
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Abstract

Underwater passive acoustics is used worldwide for multi-year monitoring of marine mammals. Yet, the large amount of audio recordings raises the need to automate the detection of acoustic events. For instance, the increasing number of Offshore Wind Farms (OWF) raises key environmental and societal issues relating to their impacts on wildlife. In this context, monitoring marine mammals along with information on their acoustic environment throughout the OWF life cycle is crucial. The objective of this study is to evaluate the ability of a single deep learning model to precisely detect and localize, in time and in frequency, the marine mammal sounds over a wide frequency range and classify them by species and sound types.
A broadband hydrophone, deployed at the Fécamp OWF (Normandy, France), recorded the underwater soundscape including sounds from marine mammals occurring in the area. To visualize these sounds, 15-s spectrograms were computed. From these images, dolphin (D) and porpoise (P) sounds were manually annotated, including different types of sounds: Click-Trains (DCT, PCT), Buzzes (DB, PB) and Whistles (DW). The spectrograms were then split into five-fold cross-validation datasets, each containing one half of manual annotations and one half of only background noise. A Faster R-CNN model was trained to precisely detect and classify the marine mammal sounds in the spectrograms.
Three model output configurations were used: (1) overall detection of marine mammals (presence vs. absence), (2) detection and classification of species (two classes: dolphin, porpoise) and (3) sound types (five classes: DCT, DB, DW, PCT, PB). For the simplest configuration (1) 15.4 % of the spectrogram dataset had detections while missing only 6.6 % of annotated spectrograms. For the more precise configurations, (2) and (3), the mean Average Precision (mAP) achieved were 92.3 % (2) and 84.3 % (3), and the macro average Area under the curve (AUC) 95.7 % (2) and 94.9 % (3).
This model will help to speed up the annotation processes, by reducing the spectrogram quantity to be manually analyzed and having time-frequency boxes already drawn. Several model parameters can be adjusted to trade off missed detections and false positives which need to be carefully considered and adapted to the problem. For instance, these adjustments would be particularly relevant depending on the human resources available to manually check the model detections and the criticality of missing marine mammal sounds. These models are promising, ranging from the simple detection of marine mammal presence to precise ecological inferences over the long term.
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一种从被动声学数据中检测和分类多种海洋哺乳动物的深度学习模型
水下被动声学在世界范围内被用于海洋哺乳动物的多年监测。然而,大量的音频记录提出了自动检测声学事件的需求。例如,越来越多的海上风电场(OWF)引发了与它们对野生动物的影响有关的关键环境和社会问题。在这种情况下,监测海洋哺乳动物及其整个OWF生命周期的声环境信息至关重要。本研究的目的是评估单个深度学习模型在时间和频率上精确检测和定位海洋哺乳动物声音的能力,并根据物种和声音类型对其进行分类。部署在fsamcamp OWF(法国诺曼底)的宽带水听器记录了水下声景,包括该地区发生的海洋哺乳动物的声音。为了可视化这些声音,计算了15秒谱图。从这些图像中,人工注释了海豚(D)和鼠海豚(P)的声音,包括不同类型的声音:咔嗒声(DCT, PCT),嗡嗡声(DB, PB)和哨声(DW)。然后将谱图分成5个交叉验证数据集,每个数据集包含一半的手动注释和一半的背景噪声。训练了一个更快的R-CNN模型来精确地检测和分类谱图中的海洋哺乳动物的声音。使用了三种模型输出配置:(1)海洋哺乳动物的整体检测(存在与不存在),(2)物种的检测和分类(2类:海豚、鼠海豚)和(3)声音类型(5类:DCT、DB、DW、PCT、PB)。对于最简单的配置(1),15.4%的谱图数据集有检测,而只有6.6%的带注释的谱图缺失。对于更精确的配置(2)和(3),平均平均精度(mAP)分别为92.3%(2)和84.3%(3),宏观平均曲线下面积(AUC)分别为95.7%(2)和94.9%(3)。该模型减少了需要手工分析的谱图数量,并且已经绘制了时频盒,有助于加快标注过程。可以调整几个模型参数来权衡漏检和误报,这需要仔细考虑并适应问题。例如,这些调整将特别相关,这取决于人工检查模型检测和缺失海洋哺乳动物声音的严重性的人力资源。从对海洋哺乳动物存在的简单探测到长期精确的生态推断,这些模型都很有前景。
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来源期刊
Ecological Informatics
Ecological Informatics 环境科学-生态学
CiteScore
8.30
自引率
11.80%
发文量
346
审稿时长
46 days
期刊介绍: The journal Ecological Informatics is devoted to the publication of high quality, peer-reviewed articles on all aspects of computational ecology, data science and biogeography. The scope of the journal takes into account the data-intensive nature of ecology, the growing capacity of information technology to access, harness and leverage complex data as well as the critical need for informing sustainable management in view of global environmental and climate change. The nature of the journal is interdisciplinary at the crossover between ecology and informatics. It focuses on novel concepts and techniques for image- and genome-based monitoring and interpretation, sensor- and multimedia-based data acquisition, internet-based data archiving and sharing, data assimilation, modelling and prediction of ecological data.
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