Photosystem II: light-dependent oscillation of ligand composition at its active site.

IF 2.6 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Acta Crystallographica. Section D, Structural Biology Pub Date : 2024-12-01 Epub Date: 2024-11-28 DOI:10.1107/S2059798324011392
Jimin Wang
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Abstract

Recently, the conclusions drawn from crystallographic data about the number of oxygen ligands associated with the CaMn4 cofactor in the oxygen-evolving center (OEC) of Thermosynechococcus vulcanus photosystem II (PSII) have been called into question. Here, using OEC-omit, metal ion-omit and ligand-omit electron-density maps, it is shown that the number of oxygen ligands ranges from three in the functional OEC of monomer B following dark adaption (0F), i.e. in its ground state (PDB entry 6jlj/0F and PDB entry 6jlm/0F), to five for both monomers of PSII in photo-advanced states following exposure to one and two flashes of light. For a significant fraction of the 0F OECs in monomer A, the number is four (PDB entry 6jlj/0F). Following one flash it increases to five (PDB entry 6jlk/1F), where it remains after a second flash (PDB entry 6jlj/2F). Following a third flash (3F), it decreases to three (PDB entry 6jlp/3F), suggesting that an O2 molecule has been produced. These observations suggest a mechanism for the reaction that transforms the O atoms of the water molecules bound at the O3 and O1 sites of the OEC into O2.

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光系统II:活性位点配体组成的光依赖性振荡。
最近,从热共生球菌光系统II (PSII)的氧进化中心(OEC)中与CaMn4辅因子相关的氧配体数量的晶体学数据得出的结论受到了质疑。在这里,使用OEC-省略,金属离子-省略和配体-省略电子密度图,表明氧配体的数量范围从暗适应(0F)后单体B的功能OEC中的3个,即在基态(PDB输入6jlj/0F和PDB输入6jlm/0F),到曝光一次和两次闪光后PSII的两个单体在光超前状态下的5个。对于单体a中很大一部分的0F oec,编号为4 (PDB条目6jlj/0F)。在一次闪光之后,它增加到五次(PDB条目6jlj/ 1F),在第二次闪光之后(PDB条目6jlj/2F),它保持不变。在第三次闪光(3F)之后,它减少到3次(PDB输入6jlp/3F),表明O2分子已经产生。这些观察结果提示了一种反应机制,该反应将OEC的O3和O1位点结合的水分子的O原子转化为O2。
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来源期刊
Acta Crystallographica. Section D, Structural Biology
Acta Crystallographica. Section D, Structural Biology BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
4.50
自引率
13.60%
发文量
216
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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