A DFT analysis of the antioxidant capacity of scopolin and scopoletin

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-11-30 DOI:10.1007/s00894-024-06192-9
Baggya Sharmali Wickramanayaka Karunarathna, G. M. Supun Tharaka Gajasinghe, Jayamal Damsith Wanniarachchi, K. K. Govender, Saman Seneweera
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Abstract

Context

Scopolin and scopoletin belong to the class of coumarins and have experimentally proven natural antioxidants. Natural antioxidants are crucial in mitigating the impact of oxidants in the human body through radical scavenging. Even though scopolin and scopoletin are proven antioxidants by experimental results, their antioxidant mechanisms still remained unexplained. In this study, Density functional theory (DFT) calculations were used to study the radical scavenging mechanisms of both scopolin and scopoletin using kinetic and thermodynamics parameters. The global parameters indicated that both scopolin and scopoletin have antioxidant properties. The band gap energy \(({\Delta E}_{\text{HOMO}-\text{LUMO}})\) revealed that scopoletin (4.18 eV) has strong antioxidant activity compared to scopolin (4.31 eV). These studies found that hydrogen atom transfer (HAT) is the primary mechanism for CH3OO• radical scavenging at the C–H bond in scopolin (91.98 kcal.mol−1) and the O–H bond in scopoletin (77.05 kcal.mol−1) due to their lowest bond dissociation energies. The calculated activation energy (\({E}_{a}\)) for the radical scavenging reaction, reconfirmed scopoletin (\({E}_{a}\)=11.19 kcal.mol−1) performed as a better antioxidant compared to scopolin (\({E}_{a}\)=20.91 kcal.mol−1). In this study, the results of DFT calculations confirmed that scopoletin exhibits a higher antioxidant capacity, and HAT mechanism is the most effective radical scavenging mechanism.

Methods

The antioxidant activity of scopolin and scopoletin was determined by DFT at the B3LYP/6-31G(d) level of theory. Global parameter calculations and frontier molecular orbital analysis were conducted to assess these compounds’ capacity for scavenging radicals. Hydrogen atom transfer (HAT), sequential electron transfer proton transfer (SETPT), and sequential proton loss electron transfer (SPLET) mechanisms were the three main mechanisms that were taken into consideration. The potential energy surface (PES) verified the most appropriate processes shown by the enthalpy calculations.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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