The near-complete genome assembly of hexaploid wild oat reveals its genome evolution and divergence with cultivated oats

IF 15.8 1区生物学 Q1 PLANT SCIENCES Nature Plants Pub Date : 2024-12-03 DOI:10.1038/s41477-024-01866-x

Qiang He, Wei Li, Yuqing Miao, Yu Wang, Ningkun Liu, Jianan Liu, Tao Li, Yao Xiao, Hongyu Zhang, Yaru Wang, Hanfei Liang, Yange Yun, Shuhui Wang, Qingbin Sun, Hongru Wang, Zhizhong Gong, Huilong Du

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Abstract

Avena sterilis, the ancestral species of cultivated oats, is a valuable genetic resource for oat improvement. Here we generated a near-complete 10.99 Gb A. sterilis genome and a high-quality 10.89 Gb cultivated oat genome. Genome evolution analysis revealed the centromeres dynamic and structural variations landscape associated with domestication between wild and cultivated oats. Population genetic analysis of 117 wild and cultivated oat accessions worldwide detected many candidate genes associated with important agronomic traits for oat domestication and improvement. Remarkably, a large fragment duplication from chromosomes 4A to 4D harbouring many agronomically important genes was detected during oat domestication and was fixed in almost all cultivated oats from around the world. The genes in the duplication region from 4A showed significantly higher expression levels and lower methylation levels than the orthologous genes located on 4D in A. sterilis. This study provides valuable resources for evolutionary and functional genomics and genetic improvement of oat.

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来源期刊

Nature Plants PLANT SCIENCES-

CiteScore

25.30

自引率

2.20%

发文量

196

期刊介绍： Nature Plants is an online-only, monthly journal publishing the best research on plants — from their evolution, development, metabolism and environmental interactions to their societal significance.