Predictive analysis of COVID-19 occurrence and vaccination impacts across the 50 US states.

IF 7 2区 医学 Q1 BIOLOGY Computers in biology and medicine Pub Date : 2025-02-01 Epub Date: 2024-12-03 DOI:10.1016/j.compbiomed.2024.109493
Chinmayee Rayguru, Atina Husnayain, Hua-Sheng Chiu, Pavel Sumazin, Emily Chia-Yu Su
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Abstract

Objective: This study aimed to outline a machine learning model to assess the effectiveness of vaccination in COVID-19 confirmed cases and fatalities. The proposed model was evaluated using external validation to ensure optimal protection of vaccinated populations, distinguishing between males and females.

Methods: The data from the Centers for Disease Control and Prevention (CDC) in the US, collected between 2021 and 2023, were preprocessed through merging and imputation. A deep learning long short-term memory (LSTM) model was developed to analyze the effectiveness of vaccination in predicting COVID-19 cases and fatalities. The model, which was validated internally and externally, examined the impact of vaccination according to sex. The performance was assessed against current state-of-the-art models, with the LSTM model exhibiting lower root mean square error (RMSE) values.

Results: We performed intra-, inter-, and external-validation analyses. First, one- and two-dose vaccinations significantly reduced the number of COVID-19 cases and mortality in highly affected states. Second, in the inter-model analysis, the LSTM outperformed the autoregressive integrated moving average (ARIMA) model in predicting cases and deaths, yielding superior results for Texas, California, and Florida. Third, with external validation, our LSTM model effectively predicted vaccination impacts regardless of sex.

Conclusions: Our study demonstrates the effectiveness of COVID-19 vaccination, showing that full vaccination significantly reduced the number of confirmed cases and deaths, influencing future public health policies.

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美国50个州COVID-19发生和疫苗接种影响的预测分析。
目的:本研究旨在概述一个机器学习模型,以评估疫苗接种在COVID-19确诊病例和死亡病例中的有效性。采用外部验证对所提出的模型进行评估,以确保对接种疫苗人群的最佳保护,区分男性和女性。方法:收集美国疾病控制与预防中心(CDC)于2021年至2023年收集的数据,通过合并和imputation进行预处理。建立了一种深度学习长短期记忆(LSTM)模型,分析疫苗接种在预测COVID-19病例和死亡人数方面的有效性。该模型经内部和外部验证,检验了按性别接种疫苗的影响。根据当前最先进的模型对性能进行了评估,LSTM模型显示出较低的均方根误差(RMSE)值。结果:我们进行了内部、内部和外部验证分析。首先,一剂和两剂疫苗接种显著降低了疫情严重国家的COVID-19病例数和死亡率。其次,在模型间分析中,LSTM在预测病例和死亡方面优于自回归综合移动平均(ARIMA)模型,在德克萨斯州、加利福尼亚州和佛罗里达州产生了更好的结果。第三,通过外部验证,我们的LSTM模型有效地预测了疫苗接种的影响,而不考虑性别。结论:我们的研究证明了COVID-19疫苗接种的有效性,表明全面接种疫苗可显著减少确诊病例和死亡人数,对未来的公共卫生政策产生影响。
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来源期刊
Computers in biology and medicine
Computers in biology and medicine 工程技术-工程:生物医学
CiteScore
11.70
自引率
10.40%
发文量
1086
审稿时长
74 days
期刊介绍: Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.
期刊最新文献
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