Multiomics Analyses Reveal that Fatty Acid Metabolism and TCA Cycle Contribute to the Achievement of Functional Cure in Chronic Hepatitis B.

IF 3.6 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Journal of Proteome Research Pub Date : 2025-01-03 Epub Date: 2024-12-10 DOI:10.1021/acs.jproteome.4c00747
Kun Lin, Rongxian Qiu, Songhang Wu, Yongbin Zeng, Tianbin Chen, Zhen Xun, Ni Lin, Can Liu, Qishui Ou, Ya Fu
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Abstract

Peg-IFNα is one of the current therapeutic strategies for Hepatitis B virus (HBV) seroclearance. Nevertheless, the underlying mechanisms are not yet adequately understood. The objective of this study was to explore the potential mechanisms using multiomics approach. For the first time, we revealed the transcriptomic, proteomic, and metabolomic characterizations of Peg-IFNα-induced HBsAg seroclearance. We found that Peg-IFNα caused significant changes during the treatment. Patients who achieved HBsAg seroclearance were characterized as having decreased transcriptional activity of genes involved in fatty acid metabolism and the glycolysis/gluconeogenesis pathway, with up-regulated expression of fatty acid degradation-related proteins. Consistently, mitochondrial TCA cycle metabolites, including citric, isocitric, and malic acids, were significantly elevated in patients who achieved HBsAg seroclearance. We also observed up-regulated transcriptional activity of NK cell-mediated cytotoxicity, positive regulation of B cell activation, immunoglobulin production, and T cell receptor complex in functional-cured patients. Conversely, the metabolites associated with unsaturated fatty acid biosynthesis were increased in HBsAg persistent patients, and the transcriptional activity of immunoglobulin production and T cell receptor complex was down-regulated after 48 weeks of Peg-IFNα treatment. Our findings provided valuable resources to better understand the process of HBsAg seroclearance and shed new light on the pathways to facilitate higher functional cure rates for CHB.

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多组学分析显示脂肪酸代谢和TCA循环有助于实现慢性乙型肝炎的功能性治愈。
Peg-IFNα是目前乙型肝炎病毒(HBV)血清清除的治疗策略之一。然而,其潜在机制尚未得到充分理解。本研究的目的是利用多组学方法探讨潜在的机制。我们首次揭示了peg - ifn α-诱导HBsAg血清清除率的转录组学、蛋白质组学和代谢组学特征。我们发现,在治疗过程中,Peg-IFNα引起了显著的变化。实现HBsAg血清清除的患者的特点是参与脂肪酸代谢和糖酵解/糖异生途径的基因转录活性降低,脂肪酸降解相关蛋白表达上调。一致地,实现HBsAg血清清除的患者的线粒体TCA循环代谢物,包括柠檬酸、异柠檬酸和苹果酸,显著升高。我们还观察到功能性治愈患者NK细胞介导的细胞毒性转录活性上调,B细胞活化、免疫球蛋白产生和T细胞受体复合物的正调节。相反,与不饱和脂肪酸生物合成相关的代谢物在HBsAg持续患者中增加,免疫球蛋白产生和T细胞受体复合物的转录活性在48周的Peg-IFNα治疗后下调。我们的研究结果为更好地理解乙肝表面抗原的血清清除过程提供了宝贵的资源,并为提高慢性乙型肝炎的功能治愈率提供了新的途径。
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来源期刊
Journal of Proteome Research
Journal of Proteome Research 生物-生化研究方法
CiteScore
9.00
自引率
4.50%
发文量
251
审稿时长
3 months
期刊介绍: Journal of Proteome Research publishes content encompassing all aspects of global protein analysis and function, including the dynamic aspects of genomics, spatio-temporal proteomics, metabonomics and metabolomics, clinical and agricultural proteomics, as well as advances in methodology including bioinformatics. The theme and emphasis is on a multidisciplinary approach to the life sciences through the synergy between the different types of "omics".
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