MGT: Machine Learning Accelerates Performance Prediction of Alloy Catalytic Materials.

IF 5.3 2区 化学 Q1 CHEMISTRY, MEDICINAL Journal of Chemical Information and Modeling Pub Date : 2025-01-13 Epub Date: 2024-12-19 DOI:10.1021/acs.jcim.4c01065
Lei Geng, Yue Feng, Yaxi Niu, Fang Zhang, Huaqing Yin
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Abstract

The application of deep learning technology in the field of materials science provides a new method for predicting the adsorption energy of high-performance alloy catalysts in hydrogen evolution reactions and material discovery. The activity and selectivity of catalytic materials are mainly influenced by the properties and positions of active sites and adsorption sites. However, current deep learning models have not sufficiently focused on the importance of active atoms and adsorbates, instead placing more emphasis on the overall structure of the catalytic materials. In this paper, the overall molecular graph and a masked graph, which ignores fixed atoms, are separately input into the Masked Graph Transformer (MGT) network to enhance the model's ability to recognize key sites in catalytic reactions. Second, we introduce a nonlinear message-passing mechanism to improve the dot-product attention in the Transformer and capture the directional information on the relative positions of nodes by integrating molecular geometric information through deep tensor products. Subsequently, we constructed the NLMP-TransNet framework, which combines MPNN and Transformer and optimizes the model's learning and prediction capabilities through weight sharing and residual connections. The MGT achieves an error rate of 0.5447 eV on the small data set OC20-Ni, surpassing existing technologies. Ablation studies confirm the necessity of focusing on site features for accurate adsorption energy prediction. Code is available at https://github.com/KristinSun/OCP-MGT.git.

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深度学习技术在材料科学领域的应用,为高性能合金催化剂在析氢反应中的吸附能预测和材料发现提供了一种新的方法。催化材料的活性和选择性主要受活性位点和吸附位点的性质和位置的影响。然而,目前的深度学习模型并没有充分关注活性原子和吸附剂的重要性,而是更多地强调催化材料的整体结构。本文将整体分子图和忽略固定原子的掩膜图分别输入到掩膜图变压器(MGT)网络中,以增强模型对催化反应关键位点的识别能力。其次,我们引入了一种非线性消息传递机制来提高Transformer中的点积注意力,并通过深度张量积对分子几何信息进行积分来获取节点相对位置上的方向信息。随后,我们构建了NLMP-TransNet框架,该框架结合了MPNN和Transformer,并通过权值共享和残差连接优化了模型的学习和预测能力。MGT在OC20-Ni小数据集上实现了0.5447 eV的错误率,超过了现有技术。烧蚀研究证实了关注位点特征以准确预测吸附能的必要性。代码可从https://github.com/KristinSun/OCP-MGT.git获得。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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