Mark Dinhobl, Edward Spinard, Hillary Birtlery, Nicolas Tesler, Charles Masembe, Paolo Ribeca, Manuel V Borca, Douglas P Gladue
{"title":"African swine fever virus biotype identification tool.","authors":"Mark Dinhobl, Edward Spinard, Hillary Birtlery, Nicolas Tesler, Charles Masembe, Paolo Ribeca, Manuel V Borca, Douglas P Gladue","doi":"10.1128/mra.00530-24","DOIUrl":null,"url":null,"abstract":"<p><p>African swine fever virus biotyping is a recently described classification technique that is based on an isolate's encoded proteome. In short, proteomes are compared and grouped based on unsupervised machine learning. This tool analyzes African swine fever virus (ASFV) genomes and will report their closest matches along with their ASFV biotypes. Here, we describe a standalone implementation that can be freely downloaded and used.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0053024"},"PeriodicalIF":0.7000,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Microbiology Resource Announcements","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1128/mra.00530-24","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
African swine fever virus biotyping is a recently described classification technique that is based on an isolate's encoded proteome. In short, proteomes are compared and grouped based on unsupervised machine learning. This tool analyzes African swine fever virus (ASFV) genomes and will report their closest matches along with their ASFV biotypes. Here, we describe a standalone implementation that can be freely downloaded and used.
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