Abhisek Dasgupta, Ratul Saikia, Bibhuti B Kakoti, Pratap Jyoti Handique
Bacillus altitudinis AR19, isolated from the Digboi oil refinery (India), has a genome size of 3,630,000 bp with a G+C content of 42.45%. The genome encodes 3,755 protein-coding genes, including those for ring-cleaving dioxygenases and biofilm formation. These genes likely play crucial roles in the bacterium's survival in hydrocarbon-enriched environments.
{"title":"Draft genome sequence of benzo[a]pyrene degrading <i>Bacillus altitudinis</i> strain AR19 isolated from Digboi oil refinery (India).","authors":"Abhisek Dasgupta, Ratul Saikia, Bibhuti B Kakoti, Pratap Jyoti Handique","doi":"10.1128/mra.00957-24","DOIUrl":"https://doi.org/10.1128/mra.00957-24","url":null,"abstract":"<p><p><i>Bacillus altitudinis</i> AR19, isolated from the Digboi oil refinery (India), has a genome size of 3,630,000 bp with a G+C content of 42.45%. The genome encodes 3,755 protein-coding genes, including those for ring-cleaving dioxygenases and biofilm formation. These genes likely play crucial roles in the bacterium's survival in hydrocarbon-enriched environments.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0095724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rittick Mondal, Dipanjan Das, Sujan Paul, Atanu Manna, Trishanjan Biswas, Biraj Sarkar, Shubhajit Shaw, Arka Pratim Chakraborty, Amit Kumar Mandal
Species of the genus Mammaliicoccus are recognized as opportunistic zoonotic pathogens. Here, we report the draft genome sequence of Mammaliicoccus sp. RAM2, isolated from a flacherie-infected Bombyx mori L. (Nistari race) from Raiganj University, India (25.6071° N, 88.1306° E), which offers valuable genetic insights for precise species-level identification.
{"title":"Decoding the genomic landscape of <i>Mammaliicoccus</i> sp. RAM2 isolated from flacherie-infected <i>Bombyx mori</i> L.","authors":"Rittick Mondal, Dipanjan Das, Sujan Paul, Atanu Manna, Trishanjan Biswas, Biraj Sarkar, Shubhajit Shaw, Arka Pratim Chakraborty, Amit Kumar Mandal","doi":"10.1128/mra.01322-24","DOIUrl":"https://doi.org/10.1128/mra.01322-24","url":null,"abstract":"<p><p>Species of the genus <i>Mammaliicoccus</i> are recognized as opportunistic zoonotic pathogens. Here, we report the draft genome sequence of <i>Mammaliicoccus</i> sp. RAM2, isolated from a flacherie-infected <i>Bombyx mori</i> L. (Nistari race) from Raiganj University, India (25.6071° N, 88.1306° E), which offers valuable genetic insights for precise species-level identification.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0132224"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625218","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Madhav Kumar, Lizbeth Sayavedra, Dave J Baker, Yogesh S Shouche, Arjan Narbad
Here, we report the genome sequence of Eubacterium callanderi AM6, isolated from a fecal sample obtained from a Parkinson's disease patient. The bacterial genome was sequenced using Illumina technology on a NextSeq 500 platform. The assembled genome of Eubacterium callanderi comprises 4,318,463 base pairs with a G + C content of 47.5%.
{"title":"Genome sequence of <i>Eubacterium callanderi</i> AM6, isolated from a Parkinson's disease patient.","authors":"Madhav Kumar, Lizbeth Sayavedra, Dave J Baker, Yogesh S Shouche, Arjan Narbad","doi":"10.1128/mra.00039-25","DOIUrl":"https://doi.org/10.1128/mra.00039-25","url":null,"abstract":"<p><p>Here, we report the genome sequence of <i>Eubacterium callanderi</i> AM6, isolated from a fecal sample obtained from a Parkinson's disease patient. The bacterial genome was sequenced using Illumina technology on a NextSeq 500 platform. The assembled genome of <i>Eubacterium callanderi</i> comprises 4,318,463 base pairs with a G + C content of 47.5%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0003925"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625227","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gabriel S Passos, Thierry A Pellegrinetti, Marli F Fiore
We report the complete genome sequences of five bacteria associated with the marine cyanobacterium Capilliphycus salinus ALCB114379 of the phylum Pseudomonadota. This genetic diversity offers insights into the cyanosphere, shedding light on potential relationships between these microorganisms and their cyanobacterial hosts.
{"title":"Metagenome-assembled bacterial genomes from long accurate reads associated with <i>Capilliphycus salinus</i> ALCB114379.","authors":"Gabriel S Passos, Thierry A Pellegrinetti, Marli F Fiore","doi":"10.1128/mra.00807-24","DOIUrl":"https://doi.org/10.1128/mra.00807-24","url":null,"abstract":"<p><p>We report the complete genome sequences of five bacteria associated with the marine cyanobacterium <i>Capilliphycus salinus</i> ALCB114379 of the phylum Pseudomonadota. This genetic diversity offers insights into the cyanosphere, shedding light on potential relationships between these microorganisms and their cyanobacterial hosts.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0080724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625233","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Christina M Ferreira, Jae Hee Jang, Maria Hoffmann, Yan Lou, Robert Literman, Eric W Brown, Jianghong Meng, Rebecca L Bell
Salmonella enterica serovar Newport is a major contributor to the burden of salmonellosis in the United States. We report the closed genomic sequences of 14 S. Newport isolates collected from various sources in the United States. All consist of one circular chromosome, and eight have at least one circular plasmid.
{"title":"Closed genome sequences of 14 <i>Salmonella enterica</i> serovar Newport isolates from various sources.","authors":"Christina M Ferreira, Jae Hee Jang, Maria Hoffmann, Yan Lou, Robert Literman, Eric W Brown, Jianghong Meng, Rebecca L Bell","doi":"10.1128/mra.00796-24","DOIUrl":"https://doi.org/10.1128/mra.00796-24","url":null,"abstract":"<p><p><i>Salmonella enterica</i> serovar Newport is a major contributor to the burden of salmonellosis in the United States. We report the closed genomic sequences of 14 <i>S</i>. Newport isolates collected from various sources in the United States. All consist of one circular chromosome, and eight have at least one circular plasmid.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0079624"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625216","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kyla Radke, Harry M Peless, Hayzen H Chamberlain, Shule M Aggabao, Russell T Ridd, David C Amsbury, James R Cannon, Tate G Fisher, Payson C Danielson, Matthew N Jackson, Hyunbi Hwang, Jacob D Scott, Elisa A Correa Lazaro, Atalie B Bogh, Jayden S Longhurst, Spencer T Payne, Parker Danielson, Natalie A Olsen, Bartel Van Oostendorp, Christopher C Harrell, Austin M Johnson, Jeffrey K Schachterle, Staci Avery, Donald P Breakwell, Brett E Pickett
Bacteriophage Lilbunny is a siphovirus infecting Mycobacterium smegmatis strain mc2155. It was isolated from compost of rabbit fecal matter. The genome of Lilbunny belongs to the A6 subcluster and is 50,789 bp, containing 95 open reading frames, 52.6% of which encode proteins with predicted functions, and three tRNA genes.
{"title":"Genome sequence of cluster A6 bacteriophage Lilbunny, isolated using <i>Mycobacterium smegmatis</i> mc<sup>2</sup>155.","authors":"Kyla Radke, Harry M Peless, Hayzen H Chamberlain, Shule M Aggabao, Russell T Ridd, David C Amsbury, James R Cannon, Tate G Fisher, Payson C Danielson, Matthew N Jackson, Hyunbi Hwang, Jacob D Scott, Elisa A Correa Lazaro, Atalie B Bogh, Jayden S Longhurst, Spencer T Payne, Parker Danielson, Natalie A Olsen, Bartel Van Oostendorp, Christopher C Harrell, Austin M Johnson, Jeffrey K Schachterle, Staci Avery, Donald P Breakwell, Brett E Pickett","doi":"10.1128/mra.01327-24","DOIUrl":"https://doi.org/10.1128/mra.01327-24","url":null,"abstract":"<p><p>Bacteriophage Lilbunny is a siphovirus infecting <i>Mycobacterium smegmatis</i> strain mc<sup>2</sup>155. It was isolated from compost of rabbit fecal matter. The genome of Lilbunny belongs to the A6 subcluster and is 50,789 bp, containing 95 open reading frames, 52.6% of which encode proteins with predicted functions, and three tRNA genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0132724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
William Lautert-Dutra, Francine Melise Dos Santos, Amanda Pasinato Napp, Clarissa Lovato Melo
Mitigating climate crisis has driven biotechnology research toward capturing and utilizing CO2. Production of biosurfactants by microorganisms' metabolism offers a promising solution. We present the draft genome of Vreelandella stevensii strain BS235 from a hypersaline alkaline lake (Pantanal biome, Brazil). We identified genes related to CO2 metabolism and biosurfactant production.
{"title":"Draft genome sequence of <i>Vreelandella stevensii</i> strain BS235 isolated from hypersaline lakes from Brazilian pantanal.","authors":"William Lautert-Dutra, Francine Melise Dos Santos, Amanda Pasinato Napp, Clarissa Lovato Melo","doi":"10.1128/mra.00748-24","DOIUrl":"https://doi.org/10.1128/mra.00748-24","url":null,"abstract":"<p><p>Mitigating climate crisis has driven biotechnology research toward capturing and utilizing CO<sub>2</sub>. Production of biosurfactants by microorganisms' metabolism offers a promising solution. We present the draft genome of <i>Vreelandella stevensii</i> strain BS235 from a hypersaline alkaline lake (Pantanal biome, Brazil). We identified genes related to CO<sub>2</sub> metabolism and biosurfactant production.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0074824"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Spencer Mark Mondol, Mohammed Aziz Hossain, Fahim Kabir Monjurul Haque
We report the draft genome of a cefepime-resistant A. baumannii TDU5, isolated from Turag river water in Bangladesh. The strain was serum-resistant and pathogenic. The genome size was 3,586,480 bp with 3,429 coding sequences (CDS). The isolate harbored multiple antimicrobial resistance genes including blaPER-7, blaADC-52, and blaOXA-91.
{"title":"Draft genome analysis of a serum-resistant and fourth-generation cephalosporin (cefepime)-resistant <i>Acinetobacter baumannii</i> strain TDU5 isolated from Dhaka, Bangladesh.","authors":"Spencer Mark Mondol, Mohammed Aziz Hossain, Fahim Kabir Monjurul Haque","doi":"10.1128/mra.01332-24","DOIUrl":"https://doi.org/10.1128/mra.01332-24","url":null,"abstract":"<p><p>We report the draft genome of a cefepime-resistant <i>A. baumannii</i> TDU5, isolated from Turag river water in Bangladesh. The strain was serum-resistant and pathogenic. The genome size was 3,586,480 bp with 3,429 coding sequences (CDS). The isolate harbored multiple antimicrobial resistance genes including <i>bla</i><sub>PER-7</sub>, <i>bla</i><sub>ADC-52,</sub> and <i>bla</i><sub>OXA-91</sub>.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0133224"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Girish Kumar, Han Ming Gan, André O Hudson, Michael A Savka
We report the whole-genome sequences of five culturable bacterial endophytes isolated from German hardneck garlic sap (Allium sativum L.). Three isolates were classified under the genus Sphingomonas, while the others were identified as Staphylococcus warneri and Frigoribacterium faeni. This data set will be helpful in enhancing garlic cultivation practices.
{"title":"Whole-genome sequencing of five culturable endophytes isolated from garlic flower stem sap from Upstate New York, USA.","authors":"Girish Kumar, Han Ming Gan, André O Hudson, Michael A Savka","doi":"10.1128/mra.01157-24","DOIUrl":"https://doi.org/10.1128/mra.01157-24","url":null,"abstract":"<p><p>We report the whole-genome sequences of five culturable bacterial endophytes isolated from German hardneck garlic sap (<i>Allium sativum</i> L.). Three isolates were classified under the genus <i>Sphingomonas</i>, while the others were identified as <i>Staphylococcus warneri</i> and <i>Frigoribacterium faeni</i>. This data set will be helpful in enhancing garlic cultivation practices.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0115724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Neutrophils play important roles within the innate immune system as the first line of defense against invading pathogens. Pathogens counteract these defenses through multiple mechanisms, including protective biofilm formation. Herein, we assessed proteome remodeling between Pseudomonas aeruginosa biofilms and HL-60 cells to provide new insights into host defense responses.
{"title":"Remodeling of the neutrophil proteome upon exposure to <i>Pseudomonas aeruginosa</i> biofilms.","authors":"Tia Rizakos, Jennifer Geddes-McAlister","doi":"10.1128/mra.01147-24","DOIUrl":"https://doi.org/10.1128/mra.01147-24","url":null,"abstract":"<p><p>Neutrophils play important roles within the innate immune system as the first line of defense against invading pathogens. Pathogens counteract these defenses through multiple mechanisms, including protective biofilm formation. Herein, we assessed proteome remodeling between <i>Pseudomonas aeruginosa</i> biofilms and HL-60 cells to provide new insights into host defense responses.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0114724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}