Microbiology Resource Announcements最新文献

We provide 309 quality-controlled bacterial metagenome-assembled genomes recovered from supragingival plaque metagenomes. Samples were collected from head and neck cancer patients following radiotherapy, so the recovered genomes can be useful to investigate the effects of oral cavity irradiation on oral microbiome members.

We present the complete genome of Schlesneria sp. DSM 10557, isolated from compost heap leakage (leachate). The genome consists of a single chromosome (7,067,087 bp) with a GC content of 56.48%. Genome-based phylogenetic analysis revealed that strain DSM 10557 is most closely related to members of the genus Schlesneria.

A Flavobacteriaceae sp. strain GF1 was isolated from an endosymbiotic dinoflagellate of a coral, and the genome was sequenced using a PacBio Sequel IIe system. The genome consists of a circular 5,300,001 bp chromosome and is predicted to harbor 6 rRNA genes, 42 tRNA genes, and 4,465 coding sequences.

We report the complete genome sequences of two antimony-oxidizing bacteria, Mesorhizobium sp. strain ANAO-SY3R2, comprising one chromosome (4.3 Mbp) and four circular plasmids, and Hydrogenophaga sp. strain ANAO-22, comprising one chromosome (5.8 Mbp) and two circular plasmids. These genome information extend our understanding of physiological versatility of antimony-transforming microorganisms.

We collected a urine specimen from a 20-year-old male, cultured it on Chrom-agar Enterococcus, identified it with VITEK2, and whole-genome sequenced it using the PacBio RSII. The genome was 3,111,621 nucleotides long with a GC% of 37.6%. It was identified as a human pathogen with a 92.3% probability and is available on NCBI with an accession ID of JBFBPS000000000.1.

We report the complete genome sequence of Pseudoxanthomonas koreensis TDY-1, an odor-reducing strain isolated from livestock wastewater on a pig farm. Its genome consists of a 2.97-Mb chromosome.

Prevotella is one of the major clinical anaerobic bacteria belonging to the family Prevotellaceae. Herein, we report the complete genome sequence of a clinical isolate of new Prevotella species obtained from equine bronchial lavage fluid in Japan. The genome comprised a circular chromosome with a length of 2,948,037 bp.

Phytopathogens with multi-drug resistance are emerging frequently, resulting in various disease outbreaks. Hence, exploring new antimicrobials is urgent. Here, we present the draft genome sequence of Streptomyces carpaticus FH1 strain, with the potential to produce various antimicrobial compounds. Genomic annotation revealed various genes encoding kanamycin, ectoine, and naringerin.

Recently, we identified bovine herpesvirus 5 (BoHV-5) in a vaginal swab from aborted cattle. It was unusual in two aspects: first, its association with abortion (it is otherwise mainly associated with encephalitis), and second, it is the first report from India (as it is mostly restricted to South American countries). In this study, we conducted the genome sequencing of the BoHV-5 isolate and provided insights into its phylogenetic relationships with other BoHV-5 strains. These findings contribute valuable knowledge toward understanding the epidemiology and evolution of BoHV-5.

We conducted metagenomic sequencing on a stool sample collected from urban-dwelling Pipistrellus abramus and obtained a metagenome-assembled genome of Staphylococcus nepalensis. Phylogenetic analysis revealed that this strain is closely related to the one isolated from dogs, forming a distinct clade separate from the reference genome.