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Draft genome sequence of benzo[a]pyrene degrading Bacillus altitudinis strain AR19 isolated from Digboi oil refinery (India).
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.00957-24
Abhisek Dasgupta, Ratul Saikia, Bibhuti B Kakoti, Pratap Jyoti Handique

Bacillus altitudinis AR19, isolated from the Digboi oil refinery (India), has a genome size of 3,630,000 bp with a G+C content of 42.45%. The genome encodes 3,755 protein-coding genes, including those for ring-cleaving dioxygenases and biofilm formation. These genes likely play crucial roles in the bacterium's survival in hydrocarbon-enriched environments.

从印度 Digboi 炼油厂分离出来的高纬度芽孢杆菌 AR19 基因组大小为 3,630,000 bp,G+C 含量为 42.45%。基因组编码 3,755 个蛋白质编码基因,其中包括裂环二氧酶基因和生物膜形成基因。这些基因可能对该细菌在富含碳氢化合物的环境中生存起着至关重要的作用。
{"title":"Draft genome sequence of benzo[a]pyrene degrading <i>Bacillus altitudinis</i> strain AR19 isolated from Digboi oil refinery (India).","authors":"Abhisek Dasgupta, Ratul Saikia, Bibhuti B Kakoti, Pratap Jyoti Handique","doi":"10.1128/mra.00957-24","DOIUrl":"https://doi.org/10.1128/mra.00957-24","url":null,"abstract":"<p><p><i>Bacillus altitudinis</i> AR19, isolated from the Digboi oil refinery (India), has a genome size of 3,630,000 bp with a G+C content of 42.45%. The genome encodes 3,755 protein-coding genes, including those for ring-cleaving dioxygenases and biofilm formation. These genes likely play crucial roles in the bacterium's survival in hydrocarbon-enriched environments.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0095724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Decoding the genomic landscape of Mammaliicoccus sp. RAM2 isolated from flacherie-infected Bombyx mori L.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.01322-24
Rittick Mondal, Dipanjan Das, Sujan Paul, Atanu Manna, Trishanjan Biswas, Biraj Sarkar, Shubhajit Shaw, Arka Pratim Chakraborty, Amit Kumar Mandal

Species of the genus Mammaliicoccus are recognized as opportunistic zoonotic pathogens. Here, we report the draft genome sequence of Mammaliicoccus sp. RAM2, isolated from a flacherie-infected Bombyx mori L. (Nistari race) from Raiganj University, India (25.6071° N, 88.1306° E), which offers valuable genetic insights for precise species-level identification.

{"title":"Decoding the genomic landscape of <i>Mammaliicoccus</i> sp. RAM2 isolated from flacherie-infected <i>Bombyx mori</i> L.","authors":"Rittick Mondal, Dipanjan Das, Sujan Paul, Atanu Manna, Trishanjan Biswas, Biraj Sarkar, Shubhajit Shaw, Arka Pratim Chakraborty, Amit Kumar Mandal","doi":"10.1128/mra.01322-24","DOIUrl":"https://doi.org/10.1128/mra.01322-24","url":null,"abstract":"<p><p>Species of the genus <i>Mammaliicoccus</i> are recognized as opportunistic zoonotic pathogens. Here, we report the draft genome sequence of <i>Mammaliicoccus</i> sp. RAM2, isolated from a flacherie-infected <i>Bombyx mori</i> L. (Nistari race) from Raiganj University, India (25.6071° N, 88.1306° E), which offers valuable genetic insights for precise species-level identification.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0132224"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625218","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome sequence of Eubacterium callanderi AM6, isolated from a Parkinson's disease patient.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.00039-25
Madhav Kumar, Lizbeth Sayavedra, Dave J Baker, Yogesh S Shouche, Arjan Narbad

Here, we report the genome sequence of Eubacterium callanderi AM6, isolated from a fecal sample obtained from a Parkinson's disease patient. The bacterial genome was sequenced using Illumina technology on a NextSeq 500 platform. The assembled genome of Eubacterium callanderi comprises 4,318,463 base pairs with a G + C content of 47.5%.

在此,我们报告了从一名帕金森病患者的粪便样本中分离出的Eubacterium callanderi AM6的基因组序列。利用 Illumina 技术在 NextSeq 500 平台上对该细菌的基因组进行了测序。组装后的Eubacterium callanderi基因组包含4,318,463个碱基对,G+C含量为47.5%。
{"title":"Genome sequence of <i>Eubacterium callanderi</i> AM6, isolated from a Parkinson's disease patient.","authors":"Madhav Kumar, Lizbeth Sayavedra, Dave J Baker, Yogesh S Shouche, Arjan Narbad","doi":"10.1128/mra.00039-25","DOIUrl":"https://doi.org/10.1128/mra.00039-25","url":null,"abstract":"<p><p>Here, we report the genome sequence of <i>Eubacterium callanderi</i> AM6, isolated from a fecal sample obtained from a Parkinson's disease patient. The bacterial genome was sequenced using Illumina technology on a NextSeq 500 platform. The assembled genome of <i>Eubacterium callanderi</i> comprises 4,318,463 base pairs with a G + C content of 47.5%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0003925"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625227","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metagenome-assembled bacterial genomes from long accurate reads associated with Capilliphycus salinus ALCB114379.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.00807-24
Gabriel S Passos, Thierry A Pellegrinetti, Marli F Fiore

We report the complete genome sequences of five bacteria associated with the marine cyanobacterium Capilliphycus salinus ALCB114379 of the phylum Pseudomonadota. This genetic diversity offers insights into the cyanosphere, shedding light on potential relationships between these microorganisms and their cyanobacterial hosts.

我们报告了与假单胞菌门海洋蓝藻 Capilliphycus salinus ALCB114379 相关的五种细菌的完整基因组序列。这种遗传多样性提供了对蓝藻圈的深入了解,揭示了这些微生物与其蓝藻宿主之间的潜在关系。
{"title":"Metagenome-assembled bacterial genomes from long accurate reads associated with <i>Capilliphycus salinus</i> ALCB114379.","authors":"Gabriel S Passos, Thierry A Pellegrinetti, Marli F Fiore","doi":"10.1128/mra.00807-24","DOIUrl":"https://doi.org/10.1128/mra.00807-24","url":null,"abstract":"<p><p>We report the complete genome sequences of five bacteria associated with the marine cyanobacterium <i>Capilliphycus salinus</i> ALCB114379 of the phylum Pseudomonadota. This genetic diversity offers insights into the cyanosphere, shedding light on potential relationships between these microorganisms and their cyanobacterial hosts.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0080724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625233","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Closed genome sequences of 14 Salmonella enterica serovar Newport isolates from various sources.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.00796-24
Christina M Ferreira, Jae Hee Jang, Maria Hoffmann, Yan Lou, Robert Literman, Eric W Brown, Jianghong Meng, Rebecca L Bell

Salmonella enterica serovar Newport is a major contributor to the burden of salmonellosis in the United States. We report the closed genomic sequences of 14 S. Newport isolates collected from various sources in the United States. All consist of one circular chromosome, and eight have at least one circular plasmid.

纽波特肠炎沙门氏菌是美国沙门氏菌病的主要致病菌。我们报告了从美国不同来源收集到的 14 个新港沙门氏菌分离株的封闭基因组序列。所有分离株都有一个环状染色体,其中 8 个分离株至少有一个环状质粒。
{"title":"Closed genome sequences of 14 <i>Salmonella enterica</i> serovar Newport isolates from various sources.","authors":"Christina M Ferreira, Jae Hee Jang, Maria Hoffmann, Yan Lou, Robert Literman, Eric W Brown, Jianghong Meng, Rebecca L Bell","doi":"10.1128/mra.00796-24","DOIUrl":"https://doi.org/10.1128/mra.00796-24","url":null,"abstract":"<p><p><i>Salmonella enterica</i> serovar Newport is a major contributor to the burden of salmonellosis in the United States. We report the closed genomic sequences of 14 <i>S</i>. Newport isolates collected from various sources in the United States. All consist of one circular chromosome, and eight have at least one circular plasmid.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0079624"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625216","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome sequence of cluster A6 bacteriophage Lilbunny, isolated using Mycobacterium smegmatis mc2155.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.01327-24
Kyla Radke, Harry M Peless, Hayzen H Chamberlain, Shule M Aggabao, Russell T Ridd, David C Amsbury, James R Cannon, Tate G Fisher, Payson C Danielson, Matthew N Jackson, Hyunbi Hwang, Jacob D Scott, Elisa A Correa Lazaro, Atalie B Bogh, Jayden S Longhurst, Spencer T Payne, Parker Danielson, Natalie A Olsen, Bartel Van Oostendorp, Christopher C Harrell, Austin M Johnson, Jeffrey K Schachterle, Staci Avery, Donald P Breakwell, Brett E Pickett

Bacteriophage Lilbunny is a siphovirus infecting Mycobacterium smegmatis strain mc2155. It was isolated from compost of rabbit fecal matter. The genome of Lilbunny belongs to the A6 subcluster and is 50,789 bp, containing 95 open reading frames, 52.6% of which encode proteins with predicted functions, and three tRNA genes.

{"title":"Genome sequence of cluster A6 bacteriophage Lilbunny, isolated using <i>Mycobacterium smegmatis</i> mc<sup>2</sup>155.","authors":"Kyla Radke, Harry M Peless, Hayzen H Chamberlain, Shule M Aggabao, Russell T Ridd, David C Amsbury, James R Cannon, Tate G Fisher, Payson C Danielson, Matthew N Jackson, Hyunbi Hwang, Jacob D Scott, Elisa A Correa Lazaro, Atalie B Bogh, Jayden S Longhurst, Spencer T Payne, Parker Danielson, Natalie A Olsen, Bartel Van Oostendorp, Christopher C Harrell, Austin M Johnson, Jeffrey K Schachterle, Staci Avery, Donald P Breakwell, Brett E Pickett","doi":"10.1128/mra.01327-24","DOIUrl":"https://doi.org/10.1128/mra.01327-24","url":null,"abstract":"<p><p>Bacteriophage Lilbunny is a siphovirus infecting <i>Mycobacterium smegmatis</i> strain mc<sup>2</sup>155. It was isolated from compost of rabbit fecal matter. The genome of Lilbunny belongs to the A6 subcluster and is 50,789 bp, containing 95 open reading frames, 52.6% of which encode proteins with predicted functions, and three tRNA genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0132724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence of Vreelandella stevensii strain BS235 isolated from hypersaline lakes from Brazilian pantanal.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.00748-24
William Lautert-Dutra, Francine Melise Dos Santos, Amanda Pasinato Napp, Clarissa Lovato Melo

Mitigating climate crisis has driven biotechnology research toward capturing and utilizing CO2. Production of biosurfactants by microorganisms' metabolism offers a promising solution. We present the draft genome of Vreelandella stevensii strain BS235 from a hypersaline alkaline lake (Pantanal biome, Brazil). We identified genes related to CO2 metabolism and biosurfactant production.

缓解气候危机促使生物技术研究转向捕获和利用二氧化碳。通过微生物的新陈代谢生产生物表面活性剂是一种很有前景的解决方案。我们展示了来自高碱性碱性湖泊(巴西潘塔纳尔生物群落)的 Vreelandella stevensii 菌株 BS235 的基因组草案。我们发现了与二氧化碳代谢和生物表面活性剂生产相关的基因。
{"title":"Draft genome sequence of <i>Vreelandella stevensii</i> strain BS235 isolated from hypersaline lakes from Brazilian pantanal.","authors":"William Lautert-Dutra, Francine Melise Dos Santos, Amanda Pasinato Napp, Clarissa Lovato Melo","doi":"10.1128/mra.00748-24","DOIUrl":"https://doi.org/10.1128/mra.00748-24","url":null,"abstract":"<p><p>Mitigating climate crisis has driven biotechnology research toward capturing and utilizing CO<sub>2</sub>. Production of biosurfactants by microorganisms' metabolism offers a promising solution. We present the draft genome of <i>Vreelandella stevensii</i> strain BS235 from a hypersaline alkaline lake (Pantanal biome, Brazil). We identified genes related to CO<sub>2</sub> metabolism and biosurfactant production.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0074824"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome analysis of a serum-resistant and fourth-generation cephalosporin (cefepime)-resistant Acinetobacter baumannii strain TDU5 isolated from Dhaka, Bangladesh.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.01332-24
Spencer Mark Mondol, Mohammed Aziz Hossain, Fahim Kabir Monjurul Haque

We report the draft genome of a cefepime-resistant A. baumannii TDU5, isolated from Turag river water in Bangladesh. The strain was serum-resistant and pathogenic. The genome size was 3,586,480 bp with 3,429 coding sequences (CDS). The isolate harbored multiple antimicrobial resistance genes including blaPER-7, blaADC-52, and blaOXA-91.

{"title":"Draft genome analysis of a serum-resistant and fourth-generation cephalosporin (cefepime)-resistant <i>Acinetobacter baumannii</i> strain TDU5 isolated from Dhaka, Bangladesh.","authors":"Spencer Mark Mondol, Mohammed Aziz Hossain, Fahim Kabir Monjurul Haque","doi":"10.1128/mra.01332-24","DOIUrl":"https://doi.org/10.1128/mra.01332-24","url":null,"abstract":"<p><p>We report the draft genome of a cefepime-resistant <i>A. baumannii</i> TDU5, isolated from Turag river water in Bangladesh. The strain was serum-resistant and pathogenic. The genome size was 3,586,480 bp with 3,429 coding sequences (CDS). The isolate harbored multiple antimicrobial resistance genes including <i>bla</i><sub>PER-7</sub>, <i>bla</i><sub>ADC-52,</sub> and <i>bla</i><sub>OXA-91</sub>.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0133224"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-genome sequencing of five culturable endophytes isolated from garlic flower stem sap from Upstate New York, USA.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.01157-24
Girish Kumar, Han Ming Gan, André O Hudson, Michael A Savka

We report the whole-genome sequences of five culturable bacterial endophytes isolated from German hardneck garlic sap (Allium sativum L.). Three isolates were classified under the genus Sphingomonas, while the others were identified as Staphylococcus warneri and Frigoribacterium faeni. This data set will be helpful in enhancing garlic cultivation practices.

{"title":"Whole-genome sequencing of five culturable endophytes isolated from garlic flower stem sap from Upstate New York, USA.","authors":"Girish Kumar, Han Ming Gan, André O Hudson, Michael A Savka","doi":"10.1128/mra.01157-24","DOIUrl":"https://doi.org/10.1128/mra.01157-24","url":null,"abstract":"<p><p>We report the whole-genome sequences of five culturable bacterial endophytes isolated from German hardneck garlic sap (<i>Allium sativum</i> L.). Three isolates were classified under the genus <i>Sphingomonas</i>, while the others were identified as <i>Staphylococcus warneri</i> and <i>Frigoribacterium faeni</i>. This data set will be helpful in enhancing garlic cultivation practices.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0115724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Remodeling of the neutrophil proteome upon exposure to Pseudomonas aeruginosa biofilms.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-03-13 DOI: 10.1128/mra.01147-24
Tia Rizakos, Jennifer Geddes-McAlister

Neutrophils play important roles within the innate immune system as the first line of defense against invading pathogens. Pathogens counteract these defenses through multiple mechanisms, including protective biofilm formation. Herein, we assessed proteome remodeling between Pseudomonas aeruginosa biofilms and HL-60 cells to provide new insights into host defense responses.

中性粒细胞在先天性免疫系统中发挥着重要作用,是抵御病原体入侵的第一道防线。病原体通过多种机制抵御这些防御,包括保护性生物膜的形成。在这里,我们评估了铜绿假单胞菌生物膜与 HL-60 细胞之间的蛋白质组重塑,为宿主防御反应提供了新的见解。
{"title":"Remodeling of the neutrophil proteome upon exposure to <i>Pseudomonas aeruginosa</i> biofilms.","authors":"Tia Rizakos, Jennifer Geddes-McAlister","doi":"10.1128/mra.01147-24","DOIUrl":"https://doi.org/10.1128/mra.01147-24","url":null,"abstract":"<p><p>Neutrophils play important roles within the innate immune system as the first line of defense against invading pathogens. Pathogens counteract these defenses through multiple mechanisms, including protective biofilm formation. Herein, we assessed proteome remodeling between <i>Pseudomonas aeruginosa</i> biofilms and HL-60 cells to provide new insights into host defense responses.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0114724"},"PeriodicalIF":0.7,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Microbiology Resource Announcements
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