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Complete genome sequences of Klebsiella pneumoniae, Klebsiella quasipneumoniae, and Klebsiella variicola clinical isolates from an epidemiology study.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-12 DOI: 10.1128/mra.01060-24
Pedro Peralta-Macotela, Bibiana Flores-Monzón, Karla Isabel Lira de León, Ana Alicia Sánchez-Tusie, Nadia Rodríguez-Medina, Alejandro Alvarado-Delgado, Edgar Aguilar-Vera, Federico Zumaya-Estrada, Ulises Garza-Ramos, Maria Carlota García-Gutiérrez

An epidemiology study of Klebsiella spp. causing infections was carried out. In the study, K. pneumoniae was identified with a prevalence of 94.6%, K. quasipneumoniae with 3.8%, and K. variicola with 1.6%. Here, we report the draft genome sequence of four selected Klebsiella pneumoniae species complex (KpSC) clinical isolates obtained from different sources.

{"title":"Complete genome sequences of <i>Klebsiella pneumoniae</i>, <i>Klebsiella quasipneumoniae</i>, and <i>Klebsiella variicola</i> clinical isolates from an epidemiology study.","authors":"Pedro Peralta-Macotela, Bibiana Flores-Monzón, Karla Isabel Lira de León, Ana Alicia Sánchez-Tusie, Nadia Rodríguez-Medina, Alejandro Alvarado-Delgado, Edgar Aguilar-Vera, Federico Zumaya-Estrada, Ulises Garza-Ramos, Maria Carlota García-Gutiérrez","doi":"10.1128/mra.01060-24","DOIUrl":"https://doi.org/10.1128/mra.01060-24","url":null,"abstract":"<p><p>An epidemiology study of <i>Klebsiella spp</i>. causing infections was carried out. In the study, <i>K. pneumoniae</i> was identified with a prevalence of 94.6%, <i>K. quasipneumoniae</i> with 3.8%, and <i>K. variicola</i> with 1.6%. Here, we report the draft genome sequence of four selected <i>Klebsiella pneumoniae</i> species complex (KpSC) clinical isolates obtained from different sources.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0106024"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of intestinal fungal communities through ITS amplicon from metagenomic libraries of sea cucumber (Holothuria glaberrima).
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-12 DOI: 10.1128/mra.01320-24
Jessica Alejandra Paez-Diaz, Rene Nieves-Morales, Gabriela Melendez-Martinez, Edwin Omar Rivera-Lopez, Josué Rodríguez-Ramos, Carlos Rios-Velazquez

The brown rock sea cucumber (Holothuria glaberrima) microbiome is vital for understanding its ecological dynamics. This study focuses on the microbial composition and abundance of fungi across different intestinal regions of H. glaberrima, giving insights into host-microbe interactions and supporting future ecological and comparative studies on their regeneration capabilities.

{"title":"Characterization of intestinal fungal communities through ITS amplicon from metagenomic libraries of sea cucumber (<i>Holothuria glaberrima</i>).","authors":"Jessica Alejandra Paez-Diaz, Rene Nieves-Morales, Gabriela Melendez-Martinez, Edwin Omar Rivera-Lopez, Josué Rodríguez-Ramos, Carlos Rios-Velazquez","doi":"10.1128/mra.01320-24","DOIUrl":"https://doi.org/10.1128/mra.01320-24","url":null,"abstract":"<p><p>The brown rock sea cucumber (<i>Holothuria glaberrima</i>) microbiome is vital for understanding its ecological dynamics. This study focuses on the microbial composition and abundance of fungi across different intestinal regions of <i>H. glaberrima,</i> giving insights into host-microbe interactions and supporting future ecological and comparative studies on their regeneration capabilities.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0132024"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399484","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of Trinickia caryophylli ATCC25418.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-12 DOI: 10.1128/mra.00929-24
Juhyun Kim, Ye Eun Kim, Sung-Jun Hong

Trinickia caryophylli causes carnation bacterial wilt disease. We report the complete genome sequence of T. caryophylli ATCC25418. There are two circular chromosomes with a total length of 6,589,249 bp, and the total GC content is 64.7%. This study describes the complete genome of strain ATCC25418.

{"title":"Complete genome sequence of <i>Trinickia caryophylli</i> ATCC25418.","authors":"Juhyun Kim, Ye Eun Kim, Sung-Jun Hong","doi":"10.1128/mra.00929-24","DOIUrl":"https://doi.org/10.1128/mra.00929-24","url":null,"abstract":"<p><p><i>Trinickia caryophylli</i> causes carnation bacterial wilt disease. We report the complete genome sequence of <i>T. caryophylli</i> ATCC25418. There are two circular chromosomes with a total length of 6,589,249 bp, and the total GC content is 64.7%. This study describes the complete genome of strain ATCC25418.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0092924"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genomes of three Sneathia vaginalis isolates from a patient with bacterial vaginosis.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-12 DOI: 10.1128/mra.00941-24
Jonathan J Panzer, Natalie McGinnis, Jochen Blom, Andrew D Winters, Jack D Sobel, Kevin R Theis

Sneathia vaginalis, a fastidious pathogen of the female reproductive tract, is implicated in obstetric and gynecologic pathologies, including spontaneous preterm birth and bacterial vaginosis. Here, we report the successful cultivation and genomic sequencing of three Sneathia vaginalis isolates collected via a vaginal swab from a patient with bacterial vaginosis.

{"title":"Draft genomes of three <i>Sneathia vaginalis</i> isolates from a patient with bacterial vaginosis.","authors":"Jonathan J Panzer, Natalie McGinnis, Jochen Blom, Andrew D Winters, Jack D Sobel, Kevin R Theis","doi":"10.1128/mra.00941-24","DOIUrl":"https://doi.org/10.1128/mra.00941-24","url":null,"abstract":"<p><p><i>Sneathia vaginalis,</i> a fastidious pathogen of the female reproductive tract, is implicated in obstetric and gynecologic pathologies, including spontaneous preterm birth and bacterial vaginosis. Here, we report the successful cultivation and genomic sequencing of three <i>Sneathia vaginalis</i> isolates collected via a vaginal swab from a patient with bacterial vaginosis.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0094124"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399042","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of Burkholderia contaminans PCR-C_Y9 isolated from Pericarpium citri reticulatae 'Chachiensis'.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-12 DOI: 10.1128/mra.01230-24
Fan Xu, Yongkai Ma, Gu Chen

Burkholderia contaminans PCR-C_Y9 was isolated from Pericarpium citri reticulatae 'Chachiensis' (PCR-C), the natural aged pericarps of Citrus reticulata Blanco 'Chachiensis.' It could degrade PCR-C lipids. Its genome was sequenced as 8.70 Mbp with a guanine-cytosine content 66.23%. It was annotated to understand properties and possible contribution to aging of PCR-C.

{"title":"Complete genome sequence of <i>Burkholderia contaminans</i> PCR-C_Y9 isolated from <i>Pericarpium citri reticulatae</i> 'Chachiensis'.","authors":"Fan Xu, Yongkai Ma, Gu Chen","doi":"10.1128/mra.01230-24","DOIUrl":"https://doi.org/10.1128/mra.01230-24","url":null,"abstract":"<p><p><i>Burkholderia contaminans</i> PCR-C_Y9 was isolated from <i>Pericarpium citri reticulatae</i> 'Chachiensis' (PCR-C), the natural aged pericarps of <i>Citrus reticulata</i> Blanco 'Chachiensis.' It could degrade PCR-C lipids. Its genome was sequenced as 8.70 Mbp with a guanine-cytosine content 66.23%. It was annotated to understand properties and possible contribution to aging of PCR-C.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0123024"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399485","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence of Levilactobacillus brevis CHEE98. 绘制短乳杆菌che98的基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-11 Epub Date: 2024-12-19 DOI: 10.1128/mra.00993-24
Ryeong-Hui Kim, DoKyung Lee, Da-Ryung Jung, Amani Sliti, Jae-Ho Shin

The draft genome sequence of Levilactobacillus brevis CHEE98, isolated from cheese, is presented here. The whole-genome assembly is 2.7 Mbp in size, with a GC content of 45.67%, and includes 2,731 predicted protein-coding genes.

从奶酪中分离出的短乳杆菌CHEE98的基因组序列草图。全基因组组装体大小为2.7 Mbp, GC含量为45.67%,包含2731个预测的蛋白质编码基因。
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引用次数: 0
Complete genome sequence of Pseudomonas brenneri strain JD2-26, a potential pollutant-reducing bacterium isolated from a municipal solid waste landfill facility. brenneri假单胞菌菌株JD2-26的全基因组序列,这是一种从城市垃圾填埋场分离的潜在的污染物还原细菌。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-11 Epub Date: 2024-12-27 DOI: 10.1128/mra.01094-24
Kook-Il Han, Young Ho Nam, Hye Kyeong Kang, Hyun Mi Jin, Eui-Jin Kim

We report here the complete genome sequence of Pseudomonas brenneri strain JD2-26 isolated from a municipal solid waste landfill facility. The genome consists of a 6.32-Mbp chromosome and a plasmid having a total of 6,100 genes, including 5,914 coding sequences.

我们在这里报告了从城市垃圾填埋场分离的布伦纳假单胞菌JD2-26株的全基因组序列。基因组由一条6.32 mbp的染色体和一个质粒组成,共有6100个基因,包括5914个编码序列。
{"title":"Complete genome sequence of <i>Pseudomonas brenneri</i> strain JD2-26, a potential pollutant-reducing bacterium isolated from a municipal solid waste landfill facility.","authors":"Kook-Il Han, Young Ho Nam, Hye Kyeong Kang, Hyun Mi Jin, Eui-Jin Kim","doi":"10.1128/mra.01094-24","DOIUrl":"10.1128/mra.01094-24","url":null,"abstract":"<p><p>We report here the complete genome sequence of <i>Pseudomonas brenneri</i> strain JD2-26 isolated from a municipal solid waste landfill facility. The genome consists of a 6.32-Mbp chromosome and a plasmid having a total of 6,100 genes, including 5,914 coding sequences.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0109424"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896051","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of fluoroacetate-degrading Caballeronia sp. S22 strain (DSM 8341) as a reference resource for investigations of microbial defluorination. 可降解氟乙酸的Caballeronia sp. S22菌株(DSM 8341)全基因组序列作为微生物除氟研究的参考资源。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-11 Epub Date: 2024-12-27 DOI: 10.1128/mra.00812-24
Catherine Badel, Enrico Bocconetti, Radi Khodr, Claire Husser, Michael Ryckelynck, Stéphane Vuilleumier

A complete genome sequence of Caballeronia sp. strain S22 capable of growing with fluoroacetate as the sole source of carbon and energy was obtained by PacBio technology. It consists of seven circular replicons totaling 9,367 kb, with a gene cluster involved in fluoroacetate utilization on its smallest 172 kb plasmid.

利用PacBio技术获得了以氟乙酸盐为唯一碳源和能量来源的Caballeronia sp.菌株S22的全基因组序列。它由7个圆形复制子组成,总长度为9,367 kb,最小的172 kb质粒上有一个涉及氟乙酸利用的基因簇。
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引用次数: 0
Draft genome sequences of Schizosaccharomyces pombe strain I-540 isolated from grape must. 绘制从葡萄中分离的pombe裂糖菌I-540的基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-11 Epub Date: 2024-12-27 DOI: 10.1128/mra.01135-24
Egor A Vasyagin, Alexey V Beletsky, Elena V Ivanova, Maxim Yu Shalamitskiy, Andrey V Mardanov, Nikolai V Ravin

Schizosaccharomyces pombe is a non-Saccharomyces yeast that is widely used in winemaking due to its ability to ferment malic acid, thus improving organoleptic properties of wine. We report the draft genome sequence of S. pombe strain I-540, isolated from grape must in Russia.

裂糖酵母(Schizosaccharomyces pombe)是一种非酵母菌,由于其能够发酵苹果酸,从而改善葡萄酒的感官特性,被广泛用于酿酒。我们报道了从俄罗斯葡萄中分离的S. pombe菌株I-540的基因组序列草图。
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引用次数: 0
First complete genome sequence of Tenacibaculum maritimum serotype O4, a rising threat in marine aquaculture. 第一个完整的海洋腱藻血清型O4的基因组序列,这是海洋水产养殖中日益增长的威胁。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-11 Epub Date: 2024-12-27 DOI: 10.1128/mra.01122-24
M Pilar Escribano, Rubén Salvador-Clavell, Miguel Balado, Beatriz Magariños, Carmen Amaro, Manuel L Lemos

Tenacibaculum maritimum is a Gram-negative marine fish pathogen. Here, we present the complete genome sequence of strain SP9.1, representing the emerging serotype O4. Selected as a model for pathogenesis studies, this genome provides valuable insights into the genetic basis of virulence and adaptation, complementing existing data for serotype O1.

海洋腱杆菌是一种革兰氏阴性的海鱼病原体。在这里,我们展示了菌株SP9.1的全基因组序列,代表了新兴的O4血清型。该基因组被选为致病机制研究的模型,为毒力和适应性的遗传基础提供了有价值的见解,补充了现有的血清型o的数据。
{"title":"First complete genome sequence of <i>Tenacibaculum maritimum</i> serotype O4, a rising threat in marine aquaculture.","authors":"M Pilar Escribano, Rubén Salvador-Clavell, Miguel Balado, Beatriz Magariños, Carmen Amaro, Manuel L Lemos","doi":"10.1128/mra.01122-24","DOIUrl":"10.1128/mra.01122-24","url":null,"abstract":"<p><p><i>Tenacibaculum maritimum</i> is a Gram-negative marine fish pathogen. Here, we present the complete genome sequence of strain SP9.1, representing the emerging serotype O4. Selected as a model for pathogenesis studies, this genome provides valuable insights into the genetic basis of virulence and adaptation, complementing existing data for serotype O1.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0112224"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Microbiology Resource Announcements
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