Here, we report the complete genome sequence of Flavobacterium sp. strain CFS9, a potential fish probiotic isolated from the body surface of Silurus asotus. The de novo assembly revealed a chromosome size of 5,370,016 bp with an estimated 4,374 open reading frames.
We report the metagenome-assembled genome of an ammonia-oxidizing archaeon that is closely related to Nitrosopumilus adriaticus NF5 but shows distinct genomic features compared to strain NF5.
As a biological alternative to managing diseases in crop production, we highlight the Bacillus velezensis strain LABIM41 (CMRP6330). Its genome, composed of 3,970,959 bp, possesses a rich metabolic machinery and a wide range of molecules with different biological activities and roles in its symbiotic relationship with its plant hosts.
Our study reveals increased gut Coriobacteriia among mare's milk consumers; metagenomic analysis showed a higher prevalence of genera belonging to class Coriobacteriia in consumers vs non-consumers. This suggests interactions between traditional dairy practices and gut microbiome composition, indicating potential for microbiota modulation through dietary interventions.
We present the genomes of two Microvirga isolates isolated from nodules found on Medicago lupulina herbarium specimens at the Marion Ownbey Herbarium at Washington State University. These genomes and others from herbarium specimens offer an unprecedented opportunity to study the bacterial evolution of plant-associated microbes over long time scales.
Ten soil cores were collected from the long-term heavy metal-contaminated Savannah River Site (SRS) and studied using shotgun metagenomics. In-line with our previous reports, Bradyrhizobium spp. dominated the SRS soils, and thus we recommend that SRS bioremediation studies target the Bradyrhizobium genus.
Clostridium scindens is an important member of the gut microbiome. Strains of C. scindens are model organisms for bile acid and steroid metabolism studies. The genome sequences for nine C. scindens strains isolated from human feces are reported. Genomes ranged from 3,403,497 to 4,318,168 bp, 46.5% to 48% G+C content, and 3,386 to 4,137 protein-coding total genes.
Environmental phages infecting Pseudomonas aeruginosa PAK, an opportunistic pathogen, were isolated from playa lakes in Lubbock, TX. We present the genome sequence of three lytic bacteriophages. Upon analysis of sequence similarity, we identified the viruses as a part of an unclassified species within the genus Pbunavirus in the Caudoviricetes class.
Diseases caused by Colletotrichum fungi result in major agricultural losses worldwide. Here, we present two draft genomes of Colletotrichum spp. responsible for foliar and pod blight on African yam bean. Colletotrichum siamense and Colletotrichum truncatum assemblies totalled 55.8 Mb in 563 contigs and 54.8 Mb in 1,240 contigs, respectively.
Pseudomonas moorei strain m318 is an arsenite-oxidizing rhizobacterium isolated from the rhizosphere of an arsenic hyperaccumulator plant, beneficial for arsenic phytoremediation. Here, we report the complete genome sequence of this strain, which consists of a circular chromosome assembled using long reads sequenced on Nanopore and polished with Illumina paired-end reads.
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