Pedro Peralta-Macotela, Bibiana Flores-Monzón, Karla Isabel Lira de León, Ana Alicia Sánchez-Tusie, Nadia Rodríguez-Medina, Alejandro Alvarado-Delgado, Edgar Aguilar-Vera, Federico Zumaya-Estrada, Ulises Garza-Ramos, Maria Carlota García-Gutiérrez
An epidemiology study of Klebsiella spp. causing infections was carried out. In the study, K. pneumoniae was identified with a prevalence of 94.6%, K. quasipneumoniae with 3.8%, and K. variicola with 1.6%. Here, we report the draft genome sequence of four selected Klebsiella pneumoniae species complex (KpSC) clinical isolates obtained from different sources.
{"title":"Complete genome sequences of <i>Klebsiella pneumoniae</i>, <i>Klebsiella quasipneumoniae</i>, and <i>Klebsiella variicola</i> clinical isolates from an epidemiology study.","authors":"Pedro Peralta-Macotela, Bibiana Flores-Monzón, Karla Isabel Lira de León, Ana Alicia Sánchez-Tusie, Nadia Rodríguez-Medina, Alejandro Alvarado-Delgado, Edgar Aguilar-Vera, Federico Zumaya-Estrada, Ulises Garza-Ramos, Maria Carlota García-Gutiérrez","doi":"10.1128/mra.01060-24","DOIUrl":"https://doi.org/10.1128/mra.01060-24","url":null,"abstract":"<p><p>An epidemiology study of <i>Klebsiella spp</i>. causing infections was carried out. In the study, <i>K. pneumoniae</i> was identified with a prevalence of 94.6%, <i>K. quasipneumoniae</i> with 3.8%, and <i>K. variicola</i> with 1.6%. Here, we report the draft genome sequence of four selected <i>Klebsiella pneumoniae</i> species complex (KpSC) clinical isolates obtained from different sources.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0106024"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The brown rock sea cucumber (Holothuria glaberrima) microbiome is vital for understanding its ecological dynamics. This study focuses on the microbial composition and abundance of fungi across different intestinal regions of H. glaberrima, giving insights into host-microbe interactions and supporting future ecological and comparative studies on their regeneration capabilities.
{"title":"Characterization of intestinal fungal communities through ITS amplicon from metagenomic libraries of sea cucumber (<i>Holothuria glaberrima</i>).","authors":"Jessica Alejandra Paez-Diaz, Rene Nieves-Morales, Gabriela Melendez-Martinez, Edwin Omar Rivera-Lopez, Josué Rodríguez-Ramos, Carlos Rios-Velazquez","doi":"10.1128/mra.01320-24","DOIUrl":"https://doi.org/10.1128/mra.01320-24","url":null,"abstract":"<p><p>The brown rock sea cucumber (<i>Holothuria glaberrima</i>) microbiome is vital for understanding its ecological dynamics. This study focuses on the microbial composition and abundance of fungi across different intestinal regions of <i>H. glaberrima,</i> giving insights into host-microbe interactions and supporting future ecological and comparative studies on their regeneration capabilities.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0132024"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399484","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Trinickia caryophylli causes carnation bacterial wilt disease. We report the complete genome sequence of T. caryophylli ATCC25418. There are two circular chromosomes with a total length of 6,589,249 bp, and the total GC content is 64.7%. This study describes the complete genome of strain ATCC25418.
{"title":"Complete genome sequence of <i>Trinickia caryophylli</i> ATCC25418.","authors":"Juhyun Kim, Ye Eun Kim, Sung-Jun Hong","doi":"10.1128/mra.00929-24","DOIUrl":"https://doi.org/10.1128/mra.00929-24","url":null,"abstract":"<p><p><i>Trinickia caryophylli</i> causes carnation bacterial wilt disease. We report the complete genome sequence of <i>T. caryophylli</i> ATCC25418. There are two circular chromosomes with a total length of 6,589,249 bp, and the total GC content is 64.7%. This study describes the complete genome of strain ATCC25418.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0092924"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jonathan J Panzer, Natalie McGinnis, Jochen Blom, Andrew D Winters, Jack D Sobel, Kevin R Theis
Sneathia vaginalis, a fastidious pathogen of the female reproductive tract, is implicated in obstetric and gynecologic pathologies, including spontaneous preterm birth and bacterial vaginosis. Here, we report the successful cultivation and genomic sequencing of three Sneathia vaginalis isolates collected via a vaginal swab from a patient with bacterial vaginosis.
{"title":"Draft genomes of three <i>Sneathia vaginalis</i> isolates from a patient with bacterial vaginosis.","authors":"Jonathan J Panzer, Natalie McGinnis, Jochen Blom, Andrew D Winters, Jack D Sobel, Kevin R Theis","doi":"10.1128/mra.00941-24","DOIUrl":"https://doi.org/10.1128/mra.00941-24","url":null,"abstract":"<p><p><i>Sneathia vaginalis,</i> a fastidious pathogen of the female reproductive tract, is implicated in obstetric and gynecologic pathologies, including spontaneous preterm birth and bacterial vaginosis. Here, we report the successful cultivation and genomic sequencing of three <i>Sneathia vaginalis</i> isolates collected via a vaginal swab from a patient with bacterial vaginosis.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0094124"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399042","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Burkholderia contaminans PCR-C_Y9 was isolated from Pericarpium citri reticulatae 'Chachiensis' (PCR-C), the natural aged pericarps of Citrus reticulata Blanco 'Chachiensis.' It could degrade PCR-C lipids. Its genome was sequenced as 8.70 Mbp with a guanine-cytosine content 66.23%. It was annotated to understand properties and possible contribution to aging of PCR-C.
{"title":"Complete genome sequence of <i>Burkholderia contaminans</i> PCR-C_Y9 isolated from <i>Pericarpium citri reticulatae</i> 'Chachiensis'.","authors":"Fan Xu, Yongkai Ma, Gu Chen","doi":"10.1128/mra.01230-24","DOIUrl":"https://doi.org/10.1128/mra.01230-24","url":null,"abstract":"<p><p><i>Burkholderia contaminans</i> PCR-C_Y9 was isolated from <i>Pericarpium citri reticulatae</i> 'Chachiensis' (PCR-C), the natural aged pericarps of <i>Citrus reticulata</i> Blanco 'Chachiensis.' It could degrade PCR-C lipids. Its genome was sequenced as 8.70 Mbp with a guanine-cytosine content 66.23%. It was annotated to understand properties and possible contribution to aging of PCR-C.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0123024"},"PeriodicalIF":0.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399485","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-19DOI: 10.1128/mra.00993-24
Ryeong-Hui Kim, DoKyung Lee, Da-Ryung Jung, Amani Sliti, Jae-Ho Shin
The draft genome sequence of Levilactobacillus brevis CHEE98, isolated from cheese, is presented here. The whole-genome assembly is 2.7 Mbp in size, with a GC content of 45.67%, and includes 2,731 predicted protein-coding genes.
{"title":"Draft genome sequence of <i>Levilactobacillus brevis</i> CHEE98.","authors":"Ryeong-Hui Kim, DoKyung Lee, Da-Ryung Jung, Amani Sliti, Jae-Ho Shin","doi":"10.1128/mra.00993-24","DOIUrl":"10.1128/mra.00993-24","url":null,"abstract":"<p><p>The draft genome sequence of <i>Levilactobacillus brevis</i> CHEE98, isolated from cheese, is presented here. The whole-genome assembly is 2.7 Mbp in size, with a GC content of 45.67%, and includes 2,731 predicted protein-coding genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0099324"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142854855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-27DOI: 10.1128/mra.01094-24
Kook-Il Han, Young Ho Nam, Hye Kyeong Kang, Hyun Mi Jin, Eui-Jin Kim
We report here the complete genome sequence of Pseudomonas brenneri strain JD2-26 isolated from a municipal solid waste landfill facility. The genome consists of a 6.32-Mbp chromosome and a plasmid having a total of 6,100 genes, including 5,914 coding sequences.
{"title":"Complete genome sequence of <i>Pseudomonas brenneri</i> strain JD2-26, a potential pollutant-reducing bacterium isolated from a municipal solid waste landfill facility.","authors":"Kook-Il Han, Young Ho Nam, Hye Kyeong Kang, Hyun Mi Jin, Eui-Jin Kim","doi":"10.1128/mra.01094-24","DOIUrl":"10.1128/mra.01094-24","url":null,"abstract":"<p><p>We report here the complete genome sequence of <i>Pseudomonas brenneri</i> strain JD2-26 isolated from a municipal solid waste landfill facility. The genome consists of a 6.32-Mbp chromosome and a plasmid having a total of 6,100 genes, including 5,914 coding sequences.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0109424"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896051","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-27DOI: 10.1128/mra.00812-24
Catherine Badel, Enrico Bocconetti, Radi Khodr, Claire Husser, Michael Ryckelynck, Stéphane Vuilleumier
A complete genome sequence of Caballeronia sp. strain S22 capable of growing with fluoroacetate as the sole source of carbon and energy was obtained by PacBio technology. It consists of seven circular replicons totaling 9,367 kb, with a gene cluster involved in fluoroacetate utilization on its smallest 172 kb plasmid.
{"title":"Complete genome sequence of fluoroacetate-degrading <i>Caballeronia</i> sp. S22 strain (DSM 8341) as a reference resource for investigations of microbial defluorination.","authors":"Catherine Badel, Enrico Bocconetti, Radi Khodr, Claire Husser, Michael Ryckelynck, Stéphane Vuilleumier","doi":"10.1128/mra.00812-24","DOIUrl":"10.1128/mra.00812-24","url":null,"abstract":"<p><p>A complete genome sequence of <i>Caballeronia</i> sp. strain S22 capable of growing with fluoroacetate as the sole source of carbon and energy was obtained by PacBio technology. It consists of seven circular replicons totaling 9,367 kb, with a gene cluster involved in fluoroacetate utilization on its smallest 172 kb plasmid.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0081224"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896052","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-27DOI: 10.1128/mra.01135-24
Egor A Vasyagin, Alexey V Beletsky, Elena V Ivanova, Maxim Yu Shalamitskiy, Andrey V Mardanov, Nikolai V Ravin
Schizosaccharomyces pombe is a non-Saccharomyces yeast that is widely used in winemaking due to its ability to ferment malic acid, thus improving organoleptic properties of wine. We report the draft genome sequence of S. pombe strain I-540, isolated from grape must in Russia.
{"title":"Draft genome sequences of <i>Schizosaccharomyces pombe</i> strain I-540 isolated from grape must.","authors":"Egor A Vasyagin, Alexey V Beletsky, Elena V Ivanova, Maxim Yu Shalamitskiy, Andrey V Mardanov, Nikolai V Ravin","doi":"10.1128/mra.01135-24","DOIUrl":"10.1128/mra.01135-24","url":null,"abstract":"<p><p><i>Schizosaccharomyces pombe</i> is a non-Saccharomyces yeast that is widely used in winemaking due to its ability to ferment malic acid, thus improving organoleptic properties of wine. We report the draft genome sequence of <i>S. pombe</i> strain I-540, isolated from grape must in Russia.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0113524"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896056","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-27DOI: 10.1128/mra.01122-24
M Pilar Escribano, Rubén Salvador-Clavell, Miguel Balado, Beatriz Magariños, Carmen Amaro, Manuel L Lemos
Tenacibaculum maritimum is a Gram-negative marine fish pathogen. Here, we present the complete genome sequence of strain SP9.1, representing the emerging serotype O4. Selected as a model for pathogenesis studies, this genome provides valuable insights into the genetic basis of virulence and adaptation, complementing existing data for serotype O1.
{"title":"First complete genome sequence of <i>Tenacibaculum maritimum</i> serotype O4, a rising threat in marine aquaculture.","authors":"M Pilar Escribano, Rubén Salvador-Clavell, Miguel Balado, Beatriz Magariños, Carmen Amaro, Manuel L Lemos","doi":"10.1128/mra.01122-24","DOIUrl":"10.1128/mra.01122-24","url":null,"abstract":"<p><p><i>Tenacibaculum maritimum</i> is a Gram-negative marine fish pathogen. Here, we present the complete genome sequence of strain SP9.1, representing the emerging serotype O4. Selected as a model for pathogenesis studies, this genome provides valuable insights into the genetic basis of virulence and adaptation, complementing existing data for serotype O1.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0112224"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}