Functional assessment of IDUA variants of uncertain significance identified by newborn screening.

IF 4.7 2区 医学 Q1 GENETICS & HEREDITY NPJ Genomic Medicine Pub Date : 2024-12-19 DOI:10.1038/s41525-024-00457-1
Seok-Ho Yu, Francyne Kubaski, Gavin Arno, Whitney Phinney, Tim C Wood, Heather Flanagan-Steet, Laura M Pollard, Richard Steet
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Abstract

With the expansion of newborn screening efforts for MPS disorders, the number of identified variants of uncertain significance in IDUA continues to increase. To better define functional consequences of identified IDUA variants, we developed a HEK293-based expression platform that can be used to determine the relative specific activity of variant α-iduronidases by combining a fluorescence-based activity assay and semi-quantitative western blotting. We employed the current platform to characterize over thirty different IDUA variants, including known benign and pathogenic variants, as well as multiple variants of uncertain significance identified through newborn screening. This analysis allowed the stratification of variant enzymes based on their relative specific activity, and uncovered distinct effects of the different variants on enzyme folding, processing, and stability. While relative specific activity serves as a useful first-level test for enzyme function, our observations reinforce the need for secondary analyses of enzyme function to fully assess variant pathogenicity.

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新生儿筛查发现的不确定意义的IDUA变异的功能评估。
随着新生儿MPS疾病筛查工作的扩大,在IDUA中发现的不确定意义的变异数量继续增加。为了更好地确定已鉴定的IDUA变体的功能后果,我们开发了一个基于hek293的表达平台,该平台可以通过结合荧光活性测定和半定量western blotting来确定变体α-iduronidase的相对特异性活性。我们使用当前的平台来描述超过30种不同的IDUA变异,包括已知的良性和致病变异,以及通过新生儿筛查确定的不确定意义的多种变异。该分析允许基于其相对特定活性对变异酶进行分层,并揭示了不同变异对酶折叠、加工和稳定性的不同影响。虽然相对特异活性可以作为酶功能的一级测试,但我们的观察结果强调了对酶功能进行二次分析以充分评估变异致病性的必要性。
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来源期刊
NPJ Genomic Medicine
NPJ Genomic Medicine Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
9.40
自引率
1.90%
发文量
67
审稿时长
17 weeks
期刊介绍: npj Genomic Medicine is an international, peer-reviewed journal dedicated to publishing the most important scientific advances in all aspects of genomics and its application in the practice of medicine. The journal defines genomic medicine as "diagnosis, prognosis, prevention and/or treatment of disease and disorders of the mind and body, using approaches informed or enabled by knowledge of the genome and the molecules it encodes." Relevant and high-impact papers that encompass studies of individuals, families, or populations are considered for publication. An emphasis will include coupling detailed phenotype and genome sequencing information, both enabled by new technologies and informatics, to delineate the underlying aetiology of disease. Clinical recommendations and/or guidelines of how that data should be used in the clinical management of those patients in the study, and others, are also encouraged.
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