Effects of different temperatures on chondrocyte growth: a transcriptomic analysis.

IF 2.1 4区 医学 Q3 GENETICS & HEREDITY BMC Medical Genomics Pub Date : 2024-12-20 DOI:10.1186/s12920-024-02070-8
Wei Zhao, Yingsong Wang, Jingming Xie, Jin Zhou, Zhi Zhao, Tao Li, Zhiyue Shi, Jie Xiao
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Abstract

Background: Our previous study demonstrated that temperature-related microwave ablation (MWA) can safely modulate growth plates of piglets' vertebrae. Therefore, this study is designed to investigate the effects of different temperatures on chondrocyte viability and the underlying molecular mechanisms in vitro.

Methods: Following a 10-minute treatment at different temperatures (37 °C, 40 °C, 42 °C, 44 °C, 46 °C, 48 °C, and 50 °C), CCK-8 assay was used to examine the viability of ATDC5 cells at 12 h. Differentially expressed genes (DEGs) and the hub genes in ATDC5 cells treated at 37 °C, 40 °C and 44 °C were identified using RNA-seq. The expression of hub genes in ATDC5 cells was validated using RT-qPCR.

Results: Compared with 37 °C, exposure to 40 °C significantly increased the viability of ATDC5 cells, while 42 °C had no significant effect. Additionally, exposure to 44 °C, 46 °C, 48 °C, and 50 °C exhibited the opposite pattern, with ATDC5 cells being particularly less than 50% active after treatment at 46 °C, 48 °C, and 50 °C. Differential expression analysis identified 179, 374 and 221 DEGs in the comparisons of 40 °C vs. 37 °C, 44 °C vs. 37 °C, and 44 °C vs. 40 °C, respectively. These DEGs predominantly regulated proliferation, differentiation, necrosis, inflammatory and immune responses, and ECM synthesis/degradation. Furthermore, they were associated with the Ras, PI3K/AKT, mTOR, cAMP, and MAPK pathways. Agt, Hspa1a, Hspb1, and Nlrc4 were identified as hub genes in DEGs, and RT-qPCR confirmed that the mRNA expression patterns of these hub genes in ATDC5 cells were largely consistent with the RNA-seq results.

Conclusion: The regulation of chondrocyte viability by temperature is associated with Ras, PI3K/AKT, mTOR, cAMP, and MAPK pathways. Additionally, Agt, Hspa1a, Hspb1, and Nlrc4 may be the key regulatory genes in this process.

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不同温度对软骨细胞生长的影响:转录组学分析。
背景:我们之前的研究表明,温度相关微波消融(MWA)可以安全地调节仔猪椎骨的生长板。因此,本研究旨在探讨不同温度对体外软骨细胞活力的影响及其潜在的分子机制。方法:在37°C、40°C、42°C、44°C、46°C、48°C和50°C的不同温度下处理10分钟后,采用CCK-8法检测ATDC5细胞在12 h时的活力。采用RNA-seq方法鉴定37°C、40°C和44°C处理的ATDC5细胞中的差异表达基因(DEGs)和枢纽基因。采用RT-qPCR验证ATDC5细胞中hub基因的表达。结果:与37℃相比,40℃处理显著提高ATDC5细胞活力,42℃处理无显著影响。此外,暴露于44°C、46°C、48°C和50°C时表现出相反的模式,在46°C、48°C和50°C处理后,ATDC5细胞的活性尤其低于50%。差异表达分析在40°C与37°C、44°C与37°C、44°C与40°C的比较中分别鉴定出179、374和221个deg。这些deg主要调节增殖、分化、坏死、炎症和免疫反应以及ECM合成/降解。此外,它们还与Ras、PI3K/AKT、mTOR、cAMP和MAPK通路相关。Agt、Hspa1a、Hspb1和Nlrc4被鉴定为DEGs中的枢纽基因,RT-qPCR证实这些枢纽基因在ATDC5细胞中的mRNA表达模式与RNA-seq结果基本一致。结论:温度对软骨细胞活力的调节与Ras、PI3K/AKT、mTOR、cAMP和MAPK通路有关。此外,Agt、Hspa1a、Hspb1和Nlrc4可能是这一过程中的关键调控基因。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
BMC Medical Genomics
BMC Medical Genomics 医学-遗传学
CiteScore
3.90
自引率
0.00%
发文量
243
审稿时长
3.5 months
期刊介绍: BMC Medical Genomics is an open access journal publishing original peer-reviewed research articles in all aspects of functional genomics, genome structure, genome-scale population genetics, epigenomics, proteomics, systems analysis, and pharmacogenomics in relation to human health and disease.
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