A Polarizable CASSCF/MM Approach Using the Interface Between OpenMMPol Library and Cfour

IF 3.4 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Journal of Computational Chemistry Pub Date : 2024-12-24 DOI:10.1002/jcc.27550
Tommaso Nottoli, Mattia Bondanza, Filippo Lipparini, Benedetta Mennucci
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Abstract

We present a polarizable embedding quantum mechanics/molecular mechanics (QM/MM) framework for ground- and excited-state Complete Active Space Self-Consistent Field (CASSCF) calculations on molecules within complex environments, such as biological systems. These environments are modeled using the AMOEBA polarizable force field. This approach is implemented by integrating the OpenMMPol library with the CFour quantum chemistry software suite. The implementation supports both single-point energy evaluations and geometry optimizations, facilitated by the availability of analytical gradients. We demonstrate the methodology by applying it to two distinct photoreceptors, exploring the impact of the protein environment on the structural and photophysical properties of their embedded chromophores.

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一种基于OpenMMPol库与c4接口的可极化CASSCF/MM方法
我们提出了一个极化嵌入量子力学/分子力学(QM/MM)框架,用于复杂环境(如生物系统)中分子的基态和激发态完全活动空间自洽场(CASSCF)计算。使用变形虫极化力场对这些环境进行建模。该方法通过将OpenMMPol库与CFour量子化学软件套件集成来实现。该实现支持单点能量评估和几何优化,通过分析梯度的可用性促进。我们通过将其应用于两种不同的光感受器来演示该方法,探索蛋白质环境对其嵌入发色团的结构和光物理性质的影响。
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来源期刊
CiteScore
6.60
自引率
3.30%
发文量
247
审稿时长
1.7 months
期刊介绍: This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.
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