Pub Date : 2024-11-15Epub Date: 2024-07-06DOI: 10.1002/jcc.27464
Dhilshada V N, Sabyasachi Sen, Mausumi Chattopadhyaya
In this study, nanocomposites of g-C3N4/MN4 (where M is Mn, Fe and Co) have been designed using advanced density functional theory (DFT) calculations. A comprehensive analysis was conducted on the geometry, electronic, optical properties, work function, charge transfer interaction and adhesion energy of the g-C3N4/MN4 heterostructures and concluded that g-C3N4/FeN4 and g-C3N4/CoN4 heterojunctions exhibit higher photocatalytic performance than individual units. The better photocatalytic activity can be attributed mainly by two facts; (i) the visible light absorption of both g-C3N4/FeN4 and g-C3N4/CoN4 interfaces are higher compared to its isolated analogs and (ii) a significant enhancement of band gap energy in g-C3N4/FeN4 and g-C3N4/CoN4 heterostructures limited the electron-hole recombination significantly. The potential of the g-C3N4/MN4 heterojunctions as a photocatalyst for the water splitting reaction was assessed by examining its band alignment for water splitting reaction. Importantly, while the electronic and magnetic properties of MN4 systems were studied, this is the first example of inclusion of MN4 on graphene-based material (g-C3N4) for studying the photocatalytic activity. The state of the art DFT calculations emphasis that g-C3N4/FeN4 and g-C3N4/CoN4 heterojunctions are half metallic photocatalysts, which is limited till date.
{"title":"Comparative study of the photocatalytic activity of g-C<sub>3</sub>N<sub>4</sub>/MN<sub>4</sub> (M = Mn, Fe, Co) for water splitting reaction: A theoretical study.","authors":"Dhilshada V N, Sabyasachi Sen, Mausumi Chattopadhyaya","doi":"10.1002/jcc.27464","DOIUrl":"10.1002/jcc.27464","url":null,"abstract":"<p><p>In this study, nanocomposites of g-C<sub>3</sub>N<sub>4</sub>/MN<sub>4</sub> (where M is Mn, Fe and Co) have been designed using advanced density functional theory (DFT) calculations. A comprehensive analysis was conducted on the geometry, electronic, optical properties, work function, charge transfer interaction and adhesion energy of the g-C<sub>3</sub>N<sub>4</sub>/MN<sub>4</sub> heterostructures and concluded that g-C<sub>3</sub>N<sub>4</sub>/FeN<sub>4</sub> and g-C<sub>3</sub>N<sub>4</sub>/CoN<sub>4</sub> heterojunctions exhibit higher photocatalytic performance than individual units. The better photocatalytic activity can be attributed mainly by two facts; (i) the visible light absorption of both g-C<sub>3</sub>N<sub>4</sub>/FeN<sub>4</sub> and g-C<sub>3</sub>N<sub>4</sub>/CoN<sub>4</sub> interfaces are higher compared to its isolated analogs and (ii) a significant enhancement of band gap energy in g-C<sub>3</sub>N<sub>4</sub>/FeN<sub>4</sub> and g-C<sub>3</sub>N<sub>4</sub>/CoN<sub>4</sub> heterostructures limited the electron-hole recombination significantly. The potential of the g-C<sub>3</sub>N<sub>4</sub>/MN<sub>4</sub> heterojunctions as a photocatalyst for the water splitting reaction was assessed by examining its band alignment for water splitting reaction. Importantly, while the electronic and magnetic properties of MN<sub>4</sub> systems were studied, this is the first example of inclusion of MN<sub>4</sub> on graphene-based material (g-C<sub>3</sub>N<sub>4</sub>) for studying the photocatalytic activity. The state of the art DFT calculations emphasis that g-C<sub>3</sub>N<sub>4</sub>/FeN<sub>4</sub> and g-C<sub>3</sub>N<sub>4</sub>/CoN<sub>4</sub> heterojunctions are half metallic photocatalysts, which is limited till date.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141544214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The minimization of the commutator of the Fock and density matrices as the error matrix in the direct inversion of the iterative subspace (CDIIS) developed by Pulay is a powerful self-consistent field (SCF) acceleration technique for the construction of optimum Fock matrix, if initiated with a fair initial guess. In this work, we present an alternative minimized error matrix to the commutator in the CDIIS, namely the residual or the gradient of the energy-functional for a Slater determinant subject to the orthonormality constraints among orbitals, representing the search for a newly improved Fock matrix in the direction of the residual in the direct inversion of the iterative subspace (RDIIS). Implemented in the computational chemistry package GAMESS, the RDIIS is compared with the standard CDIIS and the second order SCF orbital optimization (SOSCF) for tested molecules started with a crude guess. As a result, the RDIIS stably and efficiently performs the SCF convergence acceleration. Furthermore, the RDIIS is considerably independent on the subspace size with the concentrated linear coefficients accounting proportionally for the Fock matrices close to the current iteration.
{"title":"An improved DIIS method using a versatile residual matrix to accelerate SCF starting from a crude guess.","authors":"Linping Hu, Yanoar Pribadi Sarwono, Yonglong Ding, Fang He, Rui-Qin Zhang","doi":"10.1002/jcc.27463","DOIUrl":"10.1002/jcc.27463","url":null,"abstract":"<p><p>The minimization of the commutator of the Fock and density matrices as the error matrix in the direct inversion of the iterative subspace (CDIIS) developed by Pulay is a powerful self-consistent field (SCF) acceleration technique for the construction of optimum Fock matrix, if initiated with a fair initial guess. In this work, we present an alternative minimized error matrix to the commutator in the CDIIS, namely the residual or the gradient of the energy-functional for a Slater determinant subject to the orthonormality constraints among orbitals, representing the search for a newly improved Fock matrix in the direction of the residual in the direct inversion of the iterative subspace (RDIIS). Implemented in the computational chemistry package GAMESS, the RDIIS is compared with the standard CDIIS and the second order SCF orbital optimization (SOSCF) for tested molecules started with a crude guess. As a result, the RDIIS stably and efficiently performs the SCF convergence acceleration. Furthermore, the RDIIS is considerably independent on the subspace size with the concentrated linear coefficients accounting proportionally for the Fock matrices close to the current iteration.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141557652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-15Epub Date: 2024-07-15DOI: 10.1002/jcc.27465
Tesfaye Abebe Geleta, Debidatta Behera, Nabil Bouri, Victor José Ramirez Rivera, Fredy Mamani Gonzalo
Metal halide perovskites are crystalline materials with a sharp increase in popularity and rapidly becoming a major contender for optoelectronic device applications. In this work, we provide the optoelectronic features of a possible novel candidate, ZSnCl3 (Z = Na/K) Sn-based on a detailed numerical simulation. The output of the current computations is compared to the results that are currently available, and a respectable agreement is noted. The studied compounds were cubic in nature and structurally stabe. The mechanical properties reflect the mechanical stability and ductility of the proposed materials. The Sn-based single perovskite compounds proposed in this study are mechanically stable and ductile. The narrow direct band gap for NaSnCl3 and KSnCl3 are 1.36 eV and 1.47 eV, respectively, using the HSE06 hybrid function with the Boltztrp2 integrated in Quantum ESPRESSO (QE) software. The effective use of these compounds in perovskite solar cells and other optoelectronic applications was confirmed by optical absorption spectral measurements conducted in the photon energy range of 0-20 eV.
{"title":"First principles insight into the study of the structural, stability, and optoelectronic properties of alkali-based single halide perovskite ZSnCl<sub>3</sub> (Z = Na/K) materials for photovoltaic applications.","authors":"Tesfaye Abebe Geleta, Debidatta Behera, Nabil Bouri, Victor José Ramirez Rivera, Fredy Mamani Gonzalo","doi":"10.1002/jcc.27465","DOIUrl":"10.1002/jcc.27465","url":null,"abstract":"<p><p>Metal halide perovskites are crystalline materials with a sharp increase in popularity and rapidly becoming a major contender for optoelectronic device applications. In this work, we provide the optoelectronic features of a possible novel candidate, ZSnCl<sub>3</sub> (Z = Na/K) Sn-based on a detailed numerical simulation. The output of the current computations is compared to the results that are currently available, and a respectable agreement is noted. The studied compounds were cubic in nature and structurally stabe. The mechanical properties reflect the mechanical stability and ductility of the proposed materials. The Sn-based single perovskite compounds proposed in this study are mechanically stable and ductile. The narrow direct band gap for NaSnCl<sub>3</sub> and KSnCl<sub>3</sub> are 1.36 eV and 1.47 eV, respectively, using the HSE06 hybrid function with the Boltztrp2 integrated in Quantum ESPRESSO (QE) software. The effective use of these compounds in perovskite solar cells and other optoelectronic applications was confirmed by optical absorption spectral measurements conducted in the photon energy range of 0-20 eV.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141615420","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-15Epub Date: 2024-07-12DOI: 10.1002/jcc.27453
Dunia Alatoom, Mohammad Taha I Ibrahim, Tibor Furtenbacher, Attila G Császár, M Alghizzawi, Sergei N Yurchenko, Ala'a A A Azzam, Jonathan Tennyson
Empirical rovibrational energy levels are presented for the third most abundant, asymmetric carbon dioxide isotopologue, 16O12C18O, based on a compiled dataset of experimental rovibrational transitions collected from the literature. The 52 literature sources utilized provide 19,438 measured lines with unique assignments in the wavenumber range of 2-12,676 cm-1. The MARVEL (Measured Active Rotational-Vibrational Energy Levels) protocol, which is built upon the theory of spectroscopic networks, validates the great majority of these transitions and outputs 8786 empirical rovibrational energy levels with an uncertainty estimation based on the experimental uncertainties of the transitions. Issues found in the literature data, such as misassignment of quantum numbers, typographical errors, and misidentifications, are fixed before including them in the final MARVEL dataset and analysis. Comparison of the empirical energy-level data of this study with those in the line lists CDSD-2019 and Ames-2021 shows good overall agreement, significantly better for CDSD-2019; some issues raised by these comparisons are discussed.
{"title":"MARVEL analysis of high-resolution rovibrational spectra of <sup>16</sup>O<sup>12</sup>C<sup>18</sup>O.","authors":"Dunia Alatoom, Mohammad Taha I Ibrahim, Tibor Furtenbacher, Attila G Császár, M Alghizzawi, Sergei N Yurchenko, Ala'a A A Azzam, Jonathan Tennyson","doi":"10.1002/jcc.27453","DOIUrl":"10.1002/jcc.27453","url":null,"abstract":"<p><p>Empirical rovibrational energy levels are presented for the third most abundant, asymmetric carbon dioxide isotopologue, <sup>16</sup>O<sup>12</sup>C<sup>18</sup>O, based on a compiled dataset of experimental rovibrational transitions collected from the literature. The 52 literature sources utilized provide 19,438 measured lines with unique assignments in the wavenumber range of 2-12,676 cm<sup>-1</sup>. The MARVEL (Measured Active Rotational-Vibrational Energy Levels) protocol, which is built upon the theory of spectroscopic networks, validates the great majority of these transitions and outputs 8786 empirical rovibrational energy levels with an uncertainty estimation based on the experimental uncertainties of the transitions. Issues found in the literature data, such as misassignment of quantum numbers, typographical errors, and misidentifications, are fixed before including them in the final MARVEL dataset and analysis. Comparison of the empirical energy-level data of this study with those in the line lists CDSD-2019 and Ames-2021 shows good overall agreement, significantly better for CDSD-2019; some issues raised by these comparisons are discussed.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141597979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-15Epub Date: 2024-07-09DOI: 10.1002/jcc.27456
Isuru R Ariyarathna
High-level multireference and coupled cluster quantum calculations were employed to analyze low-lying electronic states of linear-MNX+ and side-bonded-M[NX]+ (M = Ca, Sr, Ba, Ra; X = O, S, Se, Te, Po) species. Their full potential energy curves (PECs), dissociation energies (Des), geometric parameters, excitation energies (Tes), and harmonic vibrational frequencies (ωes) are reported. The first three chemically bound electronic states of MNX+ and M[NX]+ are 3∑-, 1Δ, 1∑+ and 3A″, 1A', 1A″, respectively. The 3∑-, 1Δ, 1∑+ of MNX+ originate from the M+(2D) + NX(2Π) fragments, whereas the 3A″, 1A', 1A″ states of M[NX]+ dissociate to M+(2S) + NX(2Π) as a result of avoided crossings. The MNX+ and M[NX]+ are real minima on the potential energy surface and their interconversions are possible. The M2+NX-/M2+[NX]- ionic structure is an accurate representation for their low-lying electronic states. The Des of MNX+ species were found to depend on the dipole moment (μ) of the corresponding NX ligands and a linear relationship between these two parameters was observed.
{"title":"Ab initio exploration of low-lying electronic states of linear and bent MNX<sup>+</sup> (M = Ca, Sr, Ba, Ra; X = O, S, Se, Te, Po) and their origins.","authors":"Isuru R Ariyarathna","doi":"10.1002/jcc.27456","DOIUrl":"10.1002/jcc.27456","url":null,"abstract":"<p><p>High-level multireference and coupled cluster quantum calculations were employed to analyze low-lying electronic states of linear-MNX<sup>+</sup> and side-bonded-M[NX]<sup>+</sup> (M = Ca, Sr, Ba, Ra; X = O, S, Se, Te, Po) species. Their full potential energy curves (PECs), dissociation energies (D<sub>e</sub>s), geometric parameters, excitation energies (T<sub>e</sub>s), and harmonic vibrational frequencies (ω<sub>e</sub>s) are reported. The first three chemically bound electronic states of MNX<sup>+</sup> and M[NX]<sup>+</sup> are <sup>3</sup>∑<sup>-</sup>, <sup>1</sup>Δ, <sup>1</sup>∑<sup>+</sup> and <sup>3</sup>A″, <sup>1</sup>A', <sup>1</sup>A″, respectively. The <sup>3</sup>∑<sup>-</sup>, <sup>1</sup>Δ, <sup>1</sup>∑<sup>+</sup> of MNX<sup>+</sup> originate from the M<sup>+</sup>(<sup>2</sup>D) + NX(<sup>2</sup>Π) fragments, whereas the <sup>3</sup>A″, <sup>1</sup>A', <sup>1</sup>A″ states of M[NX]<sup>+</sup> dissociate to M<sup>+</sup>(<sup>2</sup>S) + NX(<sup>2</sup>Π) as a result of avoided crossings. The MNX<sup>+</sup> and M[NX]<sup>+</sup> are real minima on the potential energy surface and their interconversions are possible. The M<sup>2+</sup>NX<sup>-</sup>/M<sup>2+</sup>[NX]<sup>-</sup> ionic structure is an accurate representation for their low-lying electronic states. The D<sub>e</sub>s of MNX<sup>+</sup> species were found to depend on the dipole moment (μ) of the corresponding NX ligands and a linear relationship between these two parameters was observed.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141562178","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The electronic structure of the strongly correlated electron system plutonium hexaboride is studied by using single-particle approximations and a many-body approach. Imaginary components of impurity Green's functions show that 5fj=5/2 and 5fj=7/2 manifolds are in conducting and insulating regimes, respectively. Quasi-particle weights and their ratio suggest that the intermediate coupling mechanism is applicable for Pu 5f electrons, and PuB6 might be in the orbital-selective localized state. The weighted summation of occupation probabilities yields the interconfiguration fluctuation and average occupation number of 5f electrons n5f ~ 5.101. The interplay of 5f-5f correlation, spin-orbit coupling, Hund's exchange interaction, many-body transition of 5f configurations, and final state effects might be responsible for the quasiparticle multiplets in electronic spectrum functions. Prominent characters in the density of state, such as the coexistence of atomic multiplet peaks in the vicinity of the Fermi level and broad Hubbard bands in the high-lying regime, suggest that PuB6 could be identified as a Racah material. Finally, the quasiparticle band structure is also presented.
{"title":"Electronic structure of the strongly correlated electron system plutonium hexaboride: A study from single-particle approximations and many-body calculations.","authors":"Ru-Song Li, Xin Qu, Jin-Tao Wang, Fei Wang, Zheng Xie","doi":"10.1002/jcc.27457","DOIUrl":"10.1002/jcc.27457","url":null,"abstract":"<p><p>The electronic structure of the strongly correlated electron system plutonium hexaboride is studied by using single-particle approximations and a many-body approach. Imaginary components of impurity Green's functions show that 5f<sub>j=5/2</sub> and 5f<sub>j=7/2</sub> manifolds are in conducting and insulating regimes, respectively. Quasi-particle weights and their ratio suggest that the intermediate coupling mechanism is applicable for Pu 5f electrons, and PuB<sub>6</sub> might be in the orbital-selective localized state. The weighted summation of occupation probabilities yields the interconfiguration fluctuation and average occupation number of 5f electrons n<sub>5f</sub> ~ 5.101. The interplay of 5f-5f correlation, spin-orbit coupling, Hund's exchange interaction, many-body transition of 5f configurations, and final state effects might be responsible for the quasiparticle multiplets in electronic spectrum functions. Prominent characters in the density of state, such as the coexistence of atomic multiplet peaks in the vicinity of the Fermi level and broad Hubbard bands in the high-lying regime, suggest that PuB<sub>6</sub> could be identified as a Racah material. Finally, the quasiparticle band structure is also presented.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141618796","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-15Epub Date: 2024-07-11DOI: 10.1002/jcc.27446
Andrea Bonvicini, Benoît Champagne
In this work, the theory of the modified unit sphere representation (mUSR) has been proposed as a computational tool suitable for the three-dimensional representation of the pure electric-dipole [ ] as well as of the mixed electric-dipole/magnetic-dipole [ and ] or electric-dipole/electric-quadrupole [ and ] first hyperpolarizabilities. These five quantities are Cartesian tensors and they are responsible for the chiral signal in the chiroptical version of the hyper-Rayleigh scattering (HRS) spectroscopy, namely the HRS optical activity (HRS-OA) spectroscopy. For the first time, for each hyperpolarizability, alongside with the three-dimensional representation of the whole (i.e., reducible) Cartesian tensors, the mUSRs are developed for each of the irreducible Cartesian tensors (ICTs) that constitute them. This scheme has been applied to a series of three (chiral) hexahelicene molecules containing different degrees of electron-withdrawing (quinone) groups and characterized by the same (positive) handedness. For these molecules, the mUSR shows that, upon substitution, the most remarkable qualitative and semi-quantitative (enhancement of the molecular responses) effects are obtained for the pure electric-dipole and for the mixed electric-dipole/magnetic-dipole hyperpolarizabilities.
{"title":"Three-dimensional representation of the pure electric-dipole and the mixed first hyperpolarizabilities: The modified unit sphere representation.","authors":"Andrea Bonvicini, Benoît Champagne","doi":"10.1002/jcc.27446","DOIUrl":"10.1002/jcc.27446","url":null,"abstract":"<p><p>In this work, the theory of the modified unit sphere representation (mUSR) has been proposed as a computational tool suitable for the three-dimensional representation of the pure electric-dipole [ <math> <mrow> <msub><mrow><mi>β</mi></mrow> <mrow><mi>λ</mi> <mi>μ</mi> <mi>ν</mi></mrow> </msub> <mo>(</mo> <mo>-</mo> <mn>2</mn> <mi>ω</mi> <mo>;</mo> <mi>ω</mi> <mo>,</mo> <mi>ω</mi> <mo>)</mo></mrow> </math> ] as well as of the mixed electric-dipole/magnetic-dipole [ <math> <mrow><msup><mo> </mo> <mrow><mi>α</mi></mrow> </msup> <msub><mrow><mi>J</mi></mrow> <mrow><mi>λ</mi> <mi>μ</mi> <mi>ν</mi></mrow> </msub> <mo>(</mo> <mo>-</mo> <mn>2</mn> <mi>ω</mi> <mo>;</mo> <mi>ω</mi> <mo>,</mo> <mi>ω</mi> <mo>)</mo></mrow> </math> and <math> <mrow><msup><mo> </mo> <mrow><mi>β</mi></mrow> </msup> <msub><mrow><mi>J</mi></mrow> <mrow><mi>λ</mi> <mi>μ</mi> <mi>ν</mi></mrow> </msub> <mo>(</mo> <mo>-</mo> <mn>2</mn> <mi>ω</mi> <mo>;</mo> <mi>ω</mi> <mo>,</mo> <mi>ω</mi> <mo>)</mo></mrow> </math> ] or electric-dipole/electric-quadrupole [ <math> <mrow><msup><mo> </mo> <mrow><mi>α</mi></mrow> </msup> <msub><mrow><mi>K</mi></mrow> <mrow><mi>λ</mi> <mi>μ</mi> <mi>ν</mi> <mi>o</mi></mrow> </msub> <mo>(</mo> <mo>-</mo> <mn>2</mn> <mi>ω</mi> <mo>;</mo> <mi>ω</mi> <mo>,</mo> <mi>ω</mi> <mo>)</mo></mrow> </math> and <math> <mrow><msup><mo> </mo> <mrow><mi>β</mi></mrow> </msup> <msub><mrow><mi>K</mi></mrow> <mrow><mi>λ</mi> <mi>μ</mi> <mi>ν</mi> <mi>o</mi></mrow> </msub> <mo>(</mo> <mo>-</mo> <mn>2</mn> <mi>ω</mi> <mo>;</mo> <mi>ω</mi> <mo>,</mo> <mi>ω</mi> <mo>)</mo></mrow> </math> ] first hyperpolarizabilities. These five quantities are Cartesian tensors and they are responsible for the chiral signal in the chiroptical version of the hyper-Rayleigh scattering (HRS) spectroscopy, namely the HRS optical activity (HRS-OA) spectroscopy. For the first time, for each hyperpolarizability, alongside with the three-dimensional representation of the whole (i.e., reducible) Cartesian tensors, the mUSRs are developed for each of the irreducible Cartesian tensors (ICTs) that constitute them. This scheme has been applied to a series of three (chiral) hexahelicene molecules containing different degrees of electron-withdrawing (quinone) groups and characterized by the same (positive) handedness. For these molecules, the mUSR shows that, upon substitution, the most remarkable qualitative and semi-quantitative (enhancement of the molecular responses) effects are obtained for the pure electric-dipole and for the mixed electric-dipole/magnetic-dipole hyperpolarizabilities.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141578380","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The fluxional nature of halogen bonds (XBs) in small molecular clusters, supramolecules, and molecular crystals has received considerable attention in recent years. In this work, based on extensive density-functional theory calculations and detailed electrostatic potential (ESP), natural bonding orbital (NBO), non-covalent interactions-reduced density gradient (NCI-RDG), and quantum theory of atoms in molecules (QTAIM) analyses, we unveil the existence of fluxional halogen bonds (FXBs) in a series of linear (IC6F4I)m(OONC6H4NOO)n (m + n = 2-5) complexes of tetrafluorodiiodobenzene with dinitrobenzene which appear to be similar to the previously reported fluxional hydrogen bonds (FHBs) in small water clusters (H2O)n (n = 2-6). The obtained fluxional mechanisms involve one FXB in the systems which fluctuates reversibly between two linear CI···O XBs in the ground states (GS and GS') via a bifurcated CI O2N van der Waals interaction in the transition state (TS). The cohesive energies (Ecoh) of these complexes with up to four XBs exhibit an almost perfect linear relationship with the numbers of XBs in the systems, with the average calculated halogen bond energy of Ecoh/XB = 3.48 kcal·mol-1 in the ground states which appears to be about 55% of the average calculated hydrogen bond energy (Ecoh/HB = 6.28 kcal·mol-1) in small water clusters.
{"title":"Fluxional halogen bonds in linear complexes of tetrafluorodiiodobenzene with dinitrobenzene.","authors":"Cai-Yue Gao, Bin-Bin Pei, Si-Dian Li","doi":"10.1002/jcc.27483","DOIUrl":"https://doi.org/10.1002/jcc.27483","url":null,"abstract":"<p><p>The fluxional nature of halogen bonds (XBs) in small molecular clusters, supramolecules, and molecular crystals has received considerable attention in recent years. In this work, based on extensive density-functional theory calculations and detailed electrostatic potential (ESP), natural bonding orbital (NBO), non-covalent interactions-reduced density gradient (NCI-RDG), and quantum theory of atoms in molecules (QTAIM) analyses, we unveil the existence of fluxional halogen bonds (FXBs) in a series of linear (IC<sub>6</sub>F<sub>4</sub>I)<sub>m</sub>(OONC<sub>6</sub>H<sub>4</sub>NOO)<sub>n</sub> (m + n = 2-5) complexes of tetrafluorodiiodobenzene with dinitrobenzene which appear to be similar to the previously reported fluxional hydrogen bonds (FHBs) in small water clusters (H<sub>2</sub>O)<sub>n</sub> (n = 2-6). The obtained <math> <semantics><mrow><mi>GS</mi> <mo>⇌</mo> <mi>TS</mi> <mo>⇌</mo> <msup><mi>GS</mi> <mo>'</mo></msup> </mrow> <annotation>$$ mathrm{GS}rightleftharpoons mathrm{TS}rightleftharpoons {mathrm{GS}}^{hbox{'}} $$</annotation></semantics> </math> fluxional mechanisms involve one FXB in the systems which fluctuates reversibly between two linear CI···O XBs in the ground states (GS and GS') via a bifurcated CI O<sub>2</sub>N van der Waals interaction in the transition state (TS). The cohesive energies (E<sub>coh</sub>) of these complexes with up to four XBs exhibit an almost perfect linear relationship with the numbers of XBs in the systems, with the average calculated halogen bond energy of E<sub>coh/XB</sub> = 3.48 kcal·mol<sup>-1</sup> in the ground states which appears to be about 55% of the average calculated hydrogen bond energy (E<sub>coh/HB</sub> = 6.28 kcal·mol<sup>-1</sup>) in small water clusters.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142337873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The development of palladium-catalyzed fluorination with biaryl monophosphine ligands has faced two important problems that limit its application for bromoarenes: the formation of regioisomers and insufficient catalysis for heteroaryl substrates as bromothiophene derivatives. Overcoming these problems requires more ligand design. In this work, reliable theoretical calculations were used to elucidate important ligand features necessary for achieving more rate acceleration and selectivity. These features include increasing the ligand-substrate repulsion and creating a negative charge in the space around the fluoride ion bonded to the palladium. The investigated L5 ligand presents these features, and the calculations predict that this ligand completely suppresses the regioisomer formation in the difficult case of 4-bromoanisole. In addition, the free energy barriers are decreased by 2-3 kcal mol-1 in comparison with the catalysis involving the AlPhos ligand. Thus, the present study points out a direction for new developments in palladium-catalyzed fluorination.
{"title":"Theoretical design of new ligands to boost reaction rate and selectivity in palladium-catalyzed aromatic fluorination.","authors":"Josefredo R Pliego","doi":"10.1002/jcc.27513","DOIUrl":"https://doi.org/10.1002/jcc.27513","url":null,"abstract":"<p><p>The development of palladium-catalyzed fluorination with biaryl monophosphine ligands has faced two important problems that limit its application for bromoarenes: the formation of regioisomers and insufficient catalysis for heteroaryl substrates as bromothiophene derivatives. Overcoming these problems requires more ligand design. In this work, reliable theoretical calculations were used to elucidate important ligand features necessary for achieving more rate acceleration and selectivity. These features include increasing the ligand-substrate repulsion and creating a negative charge in the space around the fluoride ion bonded to the palladium. The investigated L5 ligand presents these features, and the calculations predict that this ligand completely suppresses the regioisomer formation in the difficult case of 4-bromoanisole. In addition, the free energy barriers are decreased by 2-3 kcal mol<sup>-1</sup> in comparison with the catalysis involving the AlPhos ligand. Thus, the present study points out a direction for new developments in palladium-catalyzed fluorination.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142337874","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Manuel Yáñez, Otilia Mó, M. Merced Montero-Campillo, Ibon Alkorta, José Elguero
In this study, we investigate the protonation effects on the structure, relative stability and basicity of complexes formed by the interaction of monomers and dimers of BeX2 and MgX2 (X = H, F) with NH3, CH2NH, HCN, and NC5H5 bases. Calculations were performed using the M06-2X/aug-cc-pVTZ formalism, along with QTAIM, ELF and NCI methods for electron density analysis and MBIE and LMO-EDA energy decomposition analyses for interaction enthalpies. The protonation of the MH2– and M2H4–Base complexes occurs at the negatively charged hydrogen atoms of the MH2 and M2H4 moieties through typical hydride abstraction reactions, while protonation at the N atom of the base is systematically less exothermic. The preference for the hydride transfer mechanism is directly associated with the significant exothermicity of H2 formation through the interaction between H− and H+, and the high hydride donor ability of these complexes. The basicity of both, MH2 and M2H4 compounds increases enormously upon association with the corresponding bases, with the increase exceeding 40 orders of magnitude in terms of ionization constants. Due to the smaller exothermicity of HF formation, the basicity of fluorides is lower than that of hydrides. In Be complexes, the protonation at the N atom of the base dominates over the fluoride abstraction mechanism. However, for the Mg complexes the fluoride abstraction mechanism is energetically the most favorable process, reflecting the greater facility of Mg complexes to lose F−.
{"title":"Hydride and halide abstraction reactions behind the enhanced basicity of Be and Mg clusters with nitrogen bases","authors":"Manuel Yáñez, Otilia Mó, M. Merced Montero-Campillo, Ibon Alkorta, José Elguero","doi":"10.1002/jcc.27509","DOIUrl":"https://doi.org/10.1002/jcc.27509","url":null,"abstract":"In this study, we investigate the protonation effects on the structure, relative stability and basicity of complexes formed by the interaction of monomers and dimers of BeX<sub>2</sub> and MgX<sub>2</sub> (X = H, F) with NH<sub>3</sub>, CH<sub>2</sub>NH, HCN, and NC<sub>5</sub>H<sub>5</sub> bases. Calculations were performed using the M06-2X/aug-cc-pVTZ formalism, along with QTAIM, ELF and NCI methods for electron density analysis and MBIE and LMO-EDA energy decomposition analyses for interaction enthalpies. The protonation of the MH<sub>2</sub>– and M<sub>2</sub>H<sub>4</sub>–Base complexes occurs at the negatively charged hydrogen atoms of the MH<sub>2</sub> and M<sub>2</sub>H<sub>4</sub> moieties through typical hydride abstraction reactions, while protonation at the N atom of the base is systematically less exothermic. The preference for the hydride transfer mechanism is directly associated with the significant exothermicity of H<sub>2</sub> formation through the interaction between H<sup>−</sup> and H<sup>+</sup>, and the high hydride donor ability of these complexes. The basicity of both, MH<sub>2</sub> and M<sub>2</sub>H<sub>4</sub> compounds increases enormously upon association with the corresponding bases, with the increase exceeding 40 orders of magnitude in terms of ionization constants. Due to the smaller exothermicity of HF formation, the basicity of fluorides is lower than that of hydrides. In Be complexes, the protonation at the N atom of the base dominates over the fluoride abstraction mechanism. However, for the Mg complexes the fluoride abstraction mechanism is energetically the most favorable process, reflecting the greater facility of Mg complexes to lose F<sup>−</sup>.","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142329121","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}