Toward a Machine Learning Approach to Interpreting X-ray Spectra of Trace Impurities by Converting XANES to EXAFS.

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry A Pub Date : 2025-01-09 Epub Date: 2024-12-24 DOI:10.1021/acs.jpca.4c05612
Micah P Prange, Niranjan Govind, Panos Stinis, Eugene S Ilton, Amanda A Howard
{"title":"Toward a Machine Learning Approach to Interpreting X-ray Spectra of Trace Impurities by Converting XANES to EXAFS.","authors":"Micah P Prange, Niranjan Govind, Panos Stinis, Eugene S Ilton, Amanda A Howard","doi":"10.1021/acs.jpca.4c05612","DOIUrl":null,"url":null,"abstract":"<p><p>The fact that the photoabsorption spectrum of a material contains information about the atomic structure, commonly understood in terms of multiple scattering theory, is the basis of the popular extended X-ray absorption spectroscopy (EXAFS) technique. How much of the same structural information is present in other complementary spectroscopic signals is not obvious. Here we use a machine learning approach to demonstrate that within theoretical models that accurately predict the EXAFS signal, the extended near-edge region does indeed contain the EXAFS-accessible structural information. We do this by exhibiting deep operator neural networks (DeepONets) that have learned the relationship between the extended and near edge portions of the X-ray absorption spectrum to predict the former from the latter. We find that we can accurately predict the EXAFS spectrum between 6 and 14 Å<sup>-1</sup> from the first 6 Å<sup>-1</sup> (≈100 eV) of the absorption spectrum of Cu<sup>2+</sup> substitutional defects in the Fe<sup>3+</sup> mineral hematite (α-Fe<sub>2</sub>O<sub>3</sub>). This surprising finding implies that theoretical analyses of X-ray absorption spectra could be implemented that extract the <i>same</i> conclusions as high-quality EXAFS studies from spectra collected over a much smaller range of photon energies. This relaxes a host of experimental limitations related to the X-ray source and measurement sample, including collection time, minimum dopant concentration, source brilliance, and energy range. We describe the theoretical data sets and DeepONet construction and show that the resulting DeepONets produce EXAFS that recovers linear combination fits to experimental data with accuracy approaching the original ab initio calculations. We discuss the implications of our findings for minor constituent characterization and for understanding the information content of spectroscopic data more broadly, including how this approach might be applied to measured experimental spectra. To encourage similar efforts, the simulated X-ray spectra, machine learning, and fitting code are publicly available.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":"346-355"},"PeriodicalIF":2.8000,"publicationDate":"2025-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Journal of Physical Chemistry A","FirstCategoryId":"1","ListUrlMain":"https://doi.org/10.1021/acs.jpca.4c05612","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/12/24 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

The fact that the photoabsorption spectrum of a material contains information about the atomic structure, commonly understood in terms of multiple scattering theory, is the basis of the popular extended X-ray absorption spectroscopy (EXAFS) technique. How much of the same structural information is present in other complementary spectroscopic signals is not obvious. Here we use a machine learning approach to demonstrate that within theoretical models that accurately predict the EXAFS signal, the extended near-edge region does indeed contain the EXAFS-accessible structural information. We do this by exhibiting deep operator neural networks (DeepONets) that have learned the relationship between the extended and near edge portions of the X-ray absorption spectrum to predict the former from the latter. We find that we can accurately predict the EXAFS spectrum between 6 and 14 Å-1 from the first 6 Å-1 (≈100 eV) of the absorption spectrum of Cu2+ substitutional defects in the Fe3+ mineral hematite (α-Fe2O3). This surprising finding implies that theoretical analyses of X-ray absorption spectra could be implemented that extract the same conclusions as high-quality EXAFS studies from spectra collected over a much smaller range of photon energies. This relaxes a host of experimental limitations related to the X-ray source and measurement sample, including collection time, minimum dopant concentration, source brilliance, and energy range. We describe the theoretical data sets and DeepONet construction and show that the resulting DeepONets produce EXAFS that recovers linear combination fits to experimental data with accuracy approaching the original ab initio calculations. We discuss the implications of our findings for minor constituent characterization and for understanding the information content of spectroscopic data more broadly, including how this approach might be applied to measured experimental spectra. To encourage similar efforts, the simulated X-ray spectra, machine learning, and fitting code are publicly available.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
通过将 XANES 转换为 EXAFS,实现解读痕量杂质 X 射线光谱的机器学习方法。
材料的光吸收光谱包含有关原子结构的信息,通常用多重散射理论来理解,这一事实是流行的扩展x射线吸收光谱(EXAFS)技术的基础。在其他互补光谱信号中存在多少相同的结构信息并不明显。在这里,我们使用机器学习方法来证明,在准确预测EXAFS信号的理论模型中,扩展的近边缘区域确实包含EXAFS可访问的结构信息。我们通过展示深度算子神经网络(DeepONets)来做到这一点,该网络已经学习了x射线吸收光谱的扩展部分和近边缘部分之间的关系,从而从后者预测前者。我们发现Fe3+矿物赤铁矿(α-Fe2O3)中Cu2+取代缺陷吸收光谱的前6 Å-1(≈100 eV)可以准确预测6 ~ 14 Å-1之间的EXAFS谱。这一令人惊讶的发现意味着,可以实施x射线吸收光谱的理论分析,从在更小的光子能量范围内收集的光谱中提取与高质量EXAFS研究相同的结论。这放宽了与x射线源和测量样品有关的大量实验限制,包括收集时间,最小掺杂剂浓度,源亮度和能量范围。我们描述了理论数据集和DeepONet的构造,并表明所得到的DeepONet产生的EXAFS恢复线性组合拟合实验数据,精度接近原始从头计算。我们讨论了我们的发现对次要成分表征和更广泛地理解光谱数据的信息内容的影响,包括如何将这种方法应用于测量的实验光谱。为了鼓励类似的努力,模拟的x射线光谱、机器学习和拟合代码都是公开的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
期刊最新文献
Systematic Testing of the Maximum Hardness and Minimum Electrophilicity Principles. Issue Editorial Masthead Issue Publication Information Microwave Spectra and Molecular Structures of the Gas-Phase Heterodimers Formed between Argon and 3,3,3-Trifluoropropene and between Acetylene and 3,3,3-Trifluoropropene High-Temperature Anharmonic Effect on Thermodynamic Properties of Methane Combustion-Related Species
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1