Efficient detection of eyes on potato tubers using deep-learning for robotic high-throughput sampling.

IF 4.1 2区 生物学 Q1 PLANT SCIENCES Frontiers in Plant Science Pub Date : 2024-12-19 eCollection Date: 2024-01-01 DOI:10.3389/fpls.2024.1512632
L G Divyanth, Salik Ram Khanal, Achyut Paudel, Chakradhar Mattupalli, Manoj Karkee
{"title":"Efficient detection of eyes on potato tubers using deep-learning for robotic high-throughput sampling.","authors":"L G Divyanth, Salik Ram Khanal, Achyut Paudel, Chakradhar Mattupalli, Manoj Karkee","doi":"10.3389/fpls.2024.1512632","DOIUrl":null,"url":null,"abstract":"<p><p>Molecular-based detection of pathogens from potato tubers hold promise, but the initial sample extraction process is labor-intensive. Developing a robotic tuber sampling system, equipped with a fast and precise machine vision technique to identify optimal sampling locations on a potato tuber, offers a viable solution. However, detecting sampling locations such as eyes and stolon scar is challenging due to variability in their appearance, size, and shape, along with soil adhering to the tubers. In this study, we addressed these challenges by evaluating various deep-learning-based object detectors, encompassing You Look Only Once (YOLO) variants of YOLOv5, YOLOv6, YOLOv7, YOLOv8, YOLOv9, YOLOv10, and YOLO11, for detecting eyes and stolon scars across a range of diverse potato cultivars. A robust image dataset obtained from tubers of five potato cultivars (three russet skinned, a red skinned, and a purple skinned) was developed as a benchmark for detection of these sampling locations. The mean average precision at an intersection over union threshold of 0.5 (mAP@0.5) ranged from 0.832 and 0.854 with YOLOv5n to 0.903 and 0.914 with YOLOv10l. Among all the tested models, YOLOv10m showed the optimal trade-off between detection accuracy (mAP@0.5 of 0.911) and inference time (92 ms), along with satisfactory generalization performance when cross-validated among the cultivars used in this study. The model benchmarking and inferences of this study provide insights for advancing the development of a robotic potato tuber sampling device.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"15 ","pages":"1512632"},"PeriodicalIF":4.1000,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11693691/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Plant Science","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3389/fpls.2024.1512632","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0

Abstract

Molecular-based detection of pathogens from potato tubers hold promise, but the initial sample extraction process is labor-intensive. Developing a robotic tuber sampling system, equipped with a fast and precise machine vision technique to identify optimal sampling locations on a potato tuber, offers a viable solution. However, detecting sampling locations such as eyes and stolon scar is challenging due to variability in their appearance, size, and shape, along with soil adhering to the tubers. In this study, we addressed these challenges by evaluating various deep-learning-based object detectors, encompassing You Look Only Once (YOLO) variants of YOLOv5, YOLOv6, YOLOv7, YOLOv8, YOLOv9, YOLOv10, and YOLO11, for detecting eyes and stolon scars across a range of diverse potato cultivars. A robust image dataset obtained from tubers of five potato cultivars (three russet skinned, a red skinned, and a purple skinned) was developed as a benchmark for detection of these sampling locations. The mean average precision at an intersection over union threshold of 0.5 (mAP@0.5) ranged from 0.832 and 0.854 with YOLOv5n to 0.903 and 0.914 with YOLOv10l. Among all the tested models, YOLOv10m showed the optimal trade-off between detection accuracy (mAP@0.5 of 0.911) and inference time (92 ms), along with satisfactory generalization performance when cross-validated among the cultivars used in this study. The model benchmarking and inferences of this study provide insights for advancing the development of a robotic potato tuber sampling device.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
对马铃薯块茎中的病原体进行基于分子的检测是大有可为的,但最初的样本提取过程是劳动密集型的。开发机器人块茎采样系统,配备快速精确的机器视觉技术,以确定马铃薯块茎上的最佳采样位置,提供了一个可行的解决方案。然而,由于薯眼和匍匐茎痕的外观、大小和形状各不相同,再加上块茎上附着的泥土,检测这些取样位置具有挑战性。在本研究中,我们通过评估各种基于深度学习的对象检测器来应对这些挑战,其中包括 YOLOv5、YOLOv6、YOLOv7、YOLOv8、YOLOv9、YOLOv10 和 YOLO11 的 "只看一次"(YOLO)变体,用于检测一系列不同马铃薯栽培品种的眼睛和匍匐茎疤痕。从五个马铃薯栽培品种(三个赤皮、一个红皮和一个紫皮)的块茎中获得的稳健图像数据集被用作检测这些取样位置的基准。在联合阈值为 0.5 的交叉点上的平均精度(mAP@0.5)从 YOLOv5n 的 0.832 和 0.854 到 YOLOv10l 的 0.903 和 0.914 不等。在所有测试模型中,YOLOv10m 在检测准确度(mAP@0.5,0.911)和推理时间(92 毫秒)之间表现出最佳的权衡,在本研究使用的栽培品种之间进行交叉验证时,其泛化性能也令人满意。本研究的模型基准和推论为推动机器人马铃薯块茎采样设备的开发提供了启示。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Frontiers in Plant Science
Frontiers in Plant Science PLANT SCIENCES-
CiteScore
7.30
自引率
14.30%
发文量
4844
审稿时长
14 weeks
期刊介绍: In an ever changing world, plant science is of the utmost importance for securing the future well-being of humankind. Plants provide oxygen, food, feed, fibers, and building materials. In addition, they are a diverse source of industrial and pharmaceutical chemicals. Plants are centrally important to the health of ecosystems, and their understanding is critical for learning how to manage and maintain a sustainable biosphere. Plant science is extremely interdisciplinary, reaching from agricultural science to paleobotany, and molecular physiology to ecology. It uses the latest developments in computer science, optics, molecular biology and genomics to address challenges in model systems, agricultural crops, and ecosystems. Plant science research inquires into the form, function, development, diversity, reproduction, evolution and uses of both higher and lower plants and their interactions with other organisms throughout the biosphere. Frontiers in Plant Science welcomes outstanding contributions in any field of plant science from basic to applied research, from organismal to molecular studies, from single plant analysis to studies of populations and whole ecosystems, and from molecular to biophysical to computational approaches. Frontiers in Plant Science publishes articles on the most outstanding discoveries across a wide research spectrum of Plant Science. The mission of Frontiers in Plant Science is to bring all relevant Plant Science areas together on a single platform.
期刊最新文献
Does "swapping" maize (Zea mays L.) inbred parents affect hybrid grain yield? - a seed production research case study. Frost tolerance improvement in pea and white lupin by a high-throughput phenotyping platform. Genomic loci associated with grain protein and mineral nutrients concentrations in Eragrostis tef under contrasting water regimes. Efficacy and mechanism of cyprosulfamide in alleviating the phytotoxicity of clomazone residue on maize seedling. GLNet: global-local feature network for wheat leaf disease image classification.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1