Mapping the chromothripsis landscape in urothelial carcinoma unravels great intratumoral and intertumoral heterogeneity

IF 4.6 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES iScience Pub Date : 2025-01-17 DOI:10.1016/j.isci.2024.111510
Yuchen Zeng (曾雨晨) , Wei Lv (吕伟) , Huiying Tao (陶荟颖) , Conghui Li (李聪慧) , Shiqi Jiang (蒋世琪) , Yuan Liang (梁媛) , Chen Chen (陈晨) , Tianxi Yu (于天熙) , Yue Li (李悦) , Shuang Wu (吴双) , Xin Cui (崔鑫) , Ning Liang (梁宁) , Ping Wang (王平) , Huixin Xu (许荟馨) , Jingjing Dong (董晶晶) , Huajing Teng (滕花景) , Ke Chen (谌科) , Kai Mu (穆锴) , Tianda Fan (范天达) , Xiaoping Cen (岑萧萍) , Peng Han (韩鹏)
{"title":"Mapping the chromothripsis landscape in urothelial carcinoma unravels great intratumoral and intertumoral heterogeneity","authors":"Yuchen Zeng (曾雨晨) ,&nbsp;Wei Lv (吕伟) ,&nbsp;Huiying Tao (陶荟颖) ,&nbsp;Conghui Li (李聪慧) ,&nbsp;Shiqi Jiang (蒋世琪) ,&nbsp;Yuan Liang (梁媛) ,&nbsp;Chen Chen (陈晨) ,&nbsp;Tianxi Yu (于天熙) ,&nbsp;Yue Li (李悦) ,&nbsp;Shuang Wu (吴双) ,&nbsp;Xin Cui (崔鑫) ,&nbsp;Ning Liang (梁宁) ,&nbsp;Ping Wang (王平) ,&nbsp;Huixin Xu (许荟馨) ,&nbsp;Jingjing Dong (董晶晶) ,&nbsp;Huajing Teng (滕花景) ,&nbsp;Ke Chen (谌科) ,&nbsp;Kai Mu (穆锴) ,&nbsp;Tianda Fan (范天达) ,&nbsp;Xiaoping Cen (岑萧萍) ,&nbsp;Peng Han (韩鹏)","doi":"10.1016/j.isci.2024.111510","DOIUrl":null,"url":null,"abstract":"<div><div>Chromothripsis, a hallmark of cancer, is characterized by extensive and localized DNA rearrangements involving one or a few chromosomes. However, its genome-wide frequency and characteristics in urothelial carcinoma (UC) remain largely unknown. Here, by analyzing single-regional and multi-regional whole-genome sequencing (WGS), we present the chromothripsis blueprint in 488 UC patients. Chromothripsis events exhibit significant intertumoral heterogeneity, being detected in 41% of UC patients, with an increase from 30% in non-muscle-invasive disease (Ta/1) to 53% in muscle-invasive disease (T2-4). The presence of chromothripsis correlates with an unstable cancer genome and poor clinical outcomes. Analysis of multi-regional WGS data from 52 patients revealed pronounced intratumoral heterogeneity with chromothripsis events detectable only in specific tumor regions rather than uniformly across all areas. Chromothripsis events evolve under positive selection and contribute to tumor dissemination. This study presents a comprehensive genome-wide chromothripsis landscape in UC, highlighting the significance of chromothripsis in UC development.</div></div>","PeriodicalId":342,"journal":{"name":"iScience","volume":"28 1","pages":"Article 111510"},"PeriodicalIF":4.6000,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11714673/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"iScience","FirstCategoryId":"103","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2589004224027378","RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0

Abstract

Chromothripsis, a hallmark of cancer, is characterized by extensive and localized DNA rearrangements involving one or a few chromosomes. However, its genome-wide frequency and characteristics in urothelial carcinoma (UC) remain largely unknown. Here, by analyzing single-regional and multi-regional whole-genome sequencing (WGS), we present the chromothripsis blueprint in 488 UC patients. Chromothripsis events exhibit significant intertumoral heterogeneity, being detected in 41% of UC patients, with an increase from 30% in non-muscle-invasive disease (Ta/1) to 53% in muscle-invasive disease (T2-4). The presence of chromothripsis correlates with an unstable cancer genome and poor clinical outcomes. Analysis of multi-regional WGS data from 52 patients revealed pronounced intratumoral heterogeneity with chromothripsis events detectable only in specific tumor regions rather than uniformly across all areas. Chromothripsis events evolve under positive selection and contribute to tumor dissemination. This study presents a comprehensive genome-wide chromothripsis landscape in UC, highlighting the significance of chromothripsis in UC development.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
绘制尿路上皮癌的染色体分裂景观揭示了肿瘤内和肿瘤间的巨大异质性。
染色体断裂是癌症的一个标志,其特征是涉及一条或几条染色体的广泛和局部DNA重排。然而,其在尿路上皮癌(UC)中的全基因组频率和特征在很大程度上仍然未知。在这里,通过分析单区域和多区域全基因组测序(WGS),我们提出了488例UC患者的染色体剥离蓝图。染色体剥离事件表现出明显的肿瘤间异质性,在41%的UC患者中检测到,从非肌肉侵袭性疾病的30% (Ta/1)增加到肌肉侵袭性疾病的53% (T2-4)。染色体断裂的存在与不稳定的癌症基因组和不良的临床结果相关。来自52例患者的多区域WGS数据分析显示,仅在特定肿瘤区域可检测到染色体碎裂事件,而不是在所有区域均可检测到。染色体裂解事件在正选择下进化并促进肿瘤扩散。本研究介绍了UC中全基因组的染色体裂解情况,强调了染色体裂解在UC发展中的意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
iScience
iScience Multidisciplinary-Multidisciplinary
CiteScore
7.20
自引率
1.70%
发文量
1972
审稿时长
6 weeks
期刊介绍: Science has many big remaining questions. To address them, we will need to work collaboratively and across disciplines. The goal of iScience is to help fuel that type of interdisciplinary thinking. iScience is a new open-access journal from Cell Press that provides a platform for original research in the life, physical, and earth sciences. The primary criterion for publication in iScience is a significant contribution to a relevant field combined with robust results and underlying methodology. The advances appearing in iScience include both fundamental and applied investigations across this interdisciplinary range of topic areas. To support transparency in scientific investigation, we are happy to consider replication studies and papers that describe negative results. We know you want your work to be published quickly and to be widely visible within your community and beyond. With the strong international reputation of Cell Press behind it, publication in iScience will help your work garner the attention and recognition it merits. Like all Cell Press journals, iScience prioritizes rapid publication. Our editorial team pays special attention to high-quality author service and to efficient, clear-cut decisions based on the information available within the manuscript. iScience taps into the expertise across Cell Press journals and selected partners to inform our editorial decisions and help publish your science in a timely and seamless way.
期刊最新文献
Evoked and entrained pupillary activity while moving to preferred tempo and beyond Genomic basis of schistosome resistance in a molluscan vector of human schistosomiasis The inhibition of PINK1/Drp1-mediated mitophagy by hyperglycemia leads to impaired osteoblastogenesis in diabetes Endothelial activating transcription factor 3 promotes angiogenesis and vascular repair in the mouse retina Mapping the chromothripsis landscape in urothelial carcinoma unravels great intratumoral and intertumoral heterogeneity
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1