Cholesterol-ester prevents lipoprotein core from solidifying: Molecular dynamics simulation.

IF 2 4区 生物学 Q2 BIOLOGY Biosystems Pub Date : 2025-01-06 DOI:10.1016/j.biosystems.2024.105390
Olga S Knyazeva, Anton A Oreshkin, Sofia I Kisil, Ekaterina A Samarina, Kristina N Mikheeva, Alexey A Tsukanov, Irina V Gosteva, Eugene A Grachev
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Abstract

As an important part of lipid metabolism the liver produces large particles called very low density lipoproteins, filled mostly with triglyceride and cholesterol esters mixture. A large percentage of the mixture composition components has a melting point above physiological temperature. Thus solid cluster formation or phase transition could be expected. Though various single-component triglyceride systems are well researched both experimentally and by various simulation techniques, to our best knowledge, tripalmitin/cholesteryl-palmitate binary mixture was not yet studied. We study tripalmitin single component system, as well as 20%-80% and 50%-50% binary mixtures of cholesteryl-palmitate and tripalmitin using molecular dynamics approach. All systems are studied at the pressure of 1 atm and the physiological temperature of 310 K, which is below the melting points of both tripalmitin and cholesteryl-palmitate. Our results show that at the time of 1000 ns, there is still no phase transition, but there is a noticeable tendency to intermolecular organizing and early signs of clustering. We check fatty acid arrangements of tripalmitin molecules in both single component system and binary mixtures with two different percentages of cholesteryl-palmitate mixed in. Our results show that the more cholesteryl-palmitate molecules are in the mixture the smaller number of tripalmitin molecules transitions to 'a fork/chair' configuration during the same calculation time. Calculated angle distributions between fatty acid chains of tripalmitin molecules confirm that. Thus, our simulation results suggest slowing down or interfering effect of cholesteryl-palmitate on the crystallizing process of the binary mixture.

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胆固醇-酯防止脂蛋白核心固化:分子动力学模拟。
肝脏作为脂质代谢的重要组成部分,产生被称为极低密度脂蛋白的大颗粒,主要由甘油三酯和胆固醇酯混合物填充。大部分混合物组成成分的熔点高于生理温度。因此,固体团簇形成或相变是可以预期的。尽管各种单组分甘油三酯系统在实验和各种模拟技术上都得到了很好的研究,但据我们所知,三棕榈醇/胆固醇-棕榈酸酯二元混合物尚未得到研究。采用分子动力学方法研究了三帕米汀单组分体系,以及20%-80%和50%-50%的胆固醇-棕榈酸酯与三帕米汀二元混合物。所有的体系都在1atm的压力和310 K的生理温度下进行了研究,310 K的生理温度低于三棕榈素和棕榈酸胆固醇的熔点。我们的结果表明,在1000 ns时,仍然没有相变,但有明显的分子间组织趋势和早期聚类迹象。我们在单组分体系和含有两种不同百分比的胆固醇-棕榈酸酯的二元混合物中检查了三棕榈醇分子的脂肪酸排列。我们的结果表明,在相同的计算时间内,混合物中胆固醇-棕榈酸酯分子越多,三棕榈酸酯分子转变为“叉/椅”构型的数量就越少。计算出的三帕米汀分子脂肪酸链之间的角度分布证实了这一点。因此,我们的模拟结果表明胆固醇-棕榈酸酯对二元混合物的结晶过程有减缓或干扰作用。
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来源期刊
Biosystems
Biosystems 生物-生物学
CiteScore
3.70
自引率
18.80%
发文量
129
审稿时长
34 days
期刊介绍: BioSystems encourages experimental, computational, and theoretical articles that link biology, evolutionary thinking, and the information processing sciences. The link areas form a circle that encompasses the fundamental nature of biological information processing, computational modeling of complex biological systems, evolutionary models of computation, the application of biological principles to the design of novel computing systems, and the use of biomolecular materials to synthesize artificial systems that capture essential principles of natural biological information processing.
期刊最新文献
Anti-wetting wing surface characteristics of a water bug, Diplonychus annulatus. The regulatory network that controls lymphopoiesis. The concepts of code biology. On the infodynamics of ramifications in constructal design. Cholesterol-ester prevents lipoprotein core from solidifying: Molecular dynamics simulation.
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