The “reaction zone” concept in modeling solid-state transformations and predicting crystal structures

IF 2.1 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Structural Chemistry Pub Date : 2024-10-23 DOI:10.1007/s11224-024-02402-5
Ekaterina O. Bukhteeva, Vladislav A. Blatov
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Abstract

We propose a new approach to determine a reaction zone in solid substances. The reaction zone of an origin atom A is defined as a region surrounded by the atoms, which can interact with A without forming self-crossings in the crystal structure network. The identification of this region is based on the topological characteristics of the free space and is essentially independent of its geometry which allows one to apply this model to different types of structures. The reaction zone can be determined by either constructing cages of the natural tiling, i.e., the partition of the crystal space by minimal cages, or analyzing the intersections of the smallest rings of connected atoms by potential interatomic contacts. The proposed approach enables one to determine the atoms to be available for interactions in a crystal structure, thus facilitating the analysis of mechanisms of solid-state transformations and the modeling of novel solid phases. We have applied this approach to generate two new sp3-hybridized carbon allotropes from 150 three-coordinated parent periodic nets. Our analysis of the natural tilings in these allotropes as well as in 1661 carbon allotropes from the SACADA database shows that the structures possessing an isohedral tiling and/or tiles with six-membered faces exhibit high hardness. The allotropes described by similar tilings demonstrate comparable mechanical properties.

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“反应区”概念在模拟固态转变和预测晶体结构
我们提出了一种确定固体物质中反应区的新方法。起源原子A的反应区被定义为被原子包围的区域,这些原子可以与A相互作用而不会在晶体结构网络中形成自交叉。该区域的识别基于自由空间的拓扑特征,并且基本上独立于其几何形状,这使得人们可以将该模型应用于不同类型的结构。反应区可以通过构建天然平铺的笼,即通过最小笼对晶体空间的划分来确定,或者通过原子间的潜在接触来分析连接原子的最小环的交集。所提出的方法使人们能够确定在晶体结构中可用于相互作用的原子,从而促进固态转变机制的分析和新型固相的建模。我们利用这种方法从150个三配位母周期网中生成了两个新的sp3杂化碳同素异形体。我们对这些同素异形体的天然瓷砖以及SACADA数据库中的1661个碳同素异形体的分析表明,具有等面体瓷砖和/或具有六元面瓷砖的结构具有高硬度。用相似的瓷砖描述的同素异形体表现出相似的机械性能。
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来源期刊
Structural Chemistry
Structural Chemistry 化学-化学综合
CiteScore
3.80
自引率
11.80%
发文量
227
审稿时长
3.7 months
期刊介绍: Structural Chemistry is an international forum for the publication of peer-reviewed original research papers that cover the condensed and gaseous states of matter and involve numerous techniques for the determination of structure and energetics, their results, and the conclusions derived from these studies. The journal overcomes the unnatural separation in the current literature among the areas of structure determination, energetics, and applications, as well as builds a bridge to other chemical disciplines. Ist comprehensive coverage encompasses broad discussion of results, observation of relationships among various properties, and the description and application of structure and energy information in all domains of chemistry. We welcome the broadest range of accounts of research in structural chemistry involving the discussion of methodologies and structures,experimental, theoretical, and computational, and their combinations. We encourage discussions of structural information collected for their chemicaland biological significance.
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