mpactR: an R adaptation of the metabolomics peak analysis computational tool (MPACT) for use in reproducible data analysis pipelines.

IF 0.7 Q4 MICROBIOLOGY Microbiology Resource Announcements Pub Date : 2025-01-15 DOI:10.1128/mra.00997-24
Allison R Mason, Gregory Johnson, Joseph Krampen, Jennifer N T Nguyen, Marcy J Balunas, Patrick D Schloss
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引用次数: 0

Abstract

mpactR automates pre-processing of liquid chromatography-tandem mass spectrometry (LC-MS/MS) data from microbiological samples to correct mispicked peaks, resolve inter-sample variation in abundance across technical replicates, account for in-source ion fragmentation, and remove background noise to yield high-quality mass spectrometry features. The package is available through CRAN and GitHub.

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mpactR:代谢组学峰值分析计算工具(MPACT)的R改编,用于可重复的数据分析管道。
mpactR可自动预处理来自微生物样品的液相色谱-串联质谱(LC-MS/MS)数据,以纠正错误的峰,解决技术重复中样品间丰度的变化,考虑源内离子碎裂,并去除背景噪声,从而获得高质量的质谱特征。该软件包可通过CRAN和GitHub获得。
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来源期刊
CiteScore
1.50
自引率
12.50%
发文量
837
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