Development and evaluation of a 4M taxonomy from nursing home staff text messages using a fine-tuned generative language model.

IF 4.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS Journal of the American Medical Informatics Association Pub Date : 2025-01-15 DOI:10.1093/jamia/ocaf006
Matthew Steven Farmer, Mihail Popescu, Kimberly Powell
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Abstract

Objective: This study aimed to explore the utilization of a fine-tuned language model to extract expressions related to the Age-Friendly Health Systems 4M Framework (What Matters, Medication, Mentation, and Mobility) from nursing home worker text messages, deploy automated mapping of these expressions to a taxonomy, and explore the created expressions and relationships.

Materials and methods: The dataset included 21 357 text messages from healthcare workers in 12 Missouri nursing homes. A sample of 860 messages was annotated by clinical experts to form a "Gold Standard" dataset. Model performance was evaluated using classification metrics including Cohen's Kappa (κ), with κ ≥ 0.60 as the performance threshold. The selected model was fine-tuned. Extractions were clustered, labeled, and arranged into a structured taxonomy for exploration.

Results: The fine-tuned model demonstrated improved extraction of 4M content (κ = 0.73). Extractions were clustered and labeled, revealing large groups of expressions related to care preferences, medication adjustments, cognitive changes, and mobility issues.

Discussion: The preliminary development of the 4M model and 4M taxonomy enables knowledge extraction from clinical text messages and aids future development of a 4M ontology. Results compliment themes and findings in other 4M research.

Conclusion: This research underscores the need for consensus building in ontology creation and the role of language models in developing ontologies, while acknowledging their limitations in logical reasoning and ontological commitments. Further development and context expansion with expert involvement of a 4M ontology are necessary.

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使用微调生成语言模型开发和评估疗养院员工短信的4M分类。
目的:本研究旨在探索利用一种微调语言模型,从养老院工作人员的短信中提取与年龄友好型健康系统4M框架(What Matters, Medication, mentment, and Mobility)相关的表达,并将这些表达自动映射到一个分类中,并探索所创建的表达和关系。材料和方法:数据集包括来自密苏里州12家养老院的医护人员的21 357条短信。临床专家对860条信息的样本进行了注释,形成了一个“黄金标准”数据集。采用Cohen’s Kappa (κ)等分类指标评价模型性能,以κ≥0.60为性能阈值。对选定的模型进行了微调。提取被聚类,标记,并安排到一个结构化的分类探索。结果:调整后的模型对4M含量的提取效果较好(κ = 0.73)。提取结果被聚类和标记,揭示了与护理偏好、药物调整、认知变化和行动能力问题相关的大组表达。讨论:4M模型和4M分类法的初步开发可以从临床文本消息中提取知识,并有助于4M本体的未来发展。结果与其他4M研究的主题和发现相辅相成。结论:本研究强调了在本体论创建和语言模型在本体论发展中的作用中建立共识的必要性,同时承认了它们在逻辑推理和本体论承诺方面的局限性。有专家参与的4M本体的进一步开发和上下文扩展是必要的。
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来源期刊
Journal of the American Medical Informatics Association
Journal of the American Medical Informatics Association 医学-计算机:跨学科应用
CiteScore
14.50
自引率
7.80%
发文量
230
审稿时长
3-8 weeks
期刊介绍: JAMIA is AMIA''s premier peer-reviewed journal for biomedical and health informatics. Covering the full spectrum of activities in the field, JAMIA includes informatics articles in the areas of clinical care, clinical research, translational science, implementation science, imaging, education, consumer health, public health, and policy. JAMIA''s articles describe innovative informatics research and systems that help to advance biomedical science and to promote health. Case reports, perspectives and reviews also help readers stay connected with the most important informatics developments in implementation, policy and education.
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