Developmental validation of the IDseek® OmniSTR™ global autosomal STR profiling kit.

Erik A C de Jong, Melanie H J Arts, Kristiaan J van der Gaag, Pieter A M van Oers, Joop P G Theelen
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Abstract

Forensic science takes advantage of population variability in autosomal Short Tandem Repeat (STR) lengths to establish human identification. The most common method for DNA profiling by STR is based on PCR, where the highly polymorphic STR regions are amplified and analysed using Capillary Electrophoresis (CE) or Massively Parallel Sequencing (MPS). MPS determines not only the repeat length, but also the repeat structure and variations in the flanking regions, making this method superior in discriminatory power compared to CE. Reverse Complement PCR (RC-PCR) is a novel, more sophisticated PCR based MPS library preparation method combining indexing and PCR amplification in a single closed-tube reaction. In this document we describe the complete developmental validation of the IDseek® OmniSTR™ kit, an RC-PCR based MPS library preparation kit. The developed IDseek® OmniSTR™ kit contains 28 autosomal STR targets, one Y-chromosomal STR and the Amelogenin gene covering all relevant STR core loci from the USA, EU, UK and Interpol.

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IDseek®OmniSTR™全球常染色体STR分析试剂盒的发展验证
法医科学利用常染色体短串联重复序列(STR)长度的人口变异性来建立人类鉴定。通过STR进行DNA分析的最常见方法是基于PCR,其中高度多态性的STR区域被扩增并使用毛细管电泳(CE)或大规模平行测序(MPS)进行分析。MPS不仅决定了重复序列的长度,而且还决定了重复序列的结构和侧翼区域的变化,使得该方法的鉴别能力优于CE。反向补体PCR (RC-PCR)是一种新颖的、更复杂的基于PCR的MPS文库制备方法,将标引和PCR扩增在单管封闭反应中结合起来。在本文中,我们描述了IDseek®OmniSTR™试剂盒的完整开发验证,这是一种基于RC-PCR的MPS文库制备试剂盒。开发的IDseek®OmniSTR™试剂盒包含28个常染色体STR靶点,1个y染色体STR和Amelogenin基因,涵盖来自美国,欧盟,英国和国际刑警组织的所有相关STR核心位点。
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The IPEFA model: An initiative for online training and education as applied by the International Society for Forensic Genetics. Expression of Concern "Population data of 17 Y-STR loci in Nanyang Han population from Henan Province, Central China" [Forensic Sci. Int. Gene. 13 (2014) 145-146]. Expression of Concern "Population genetics of 17 Y-STR loci in a large Chinese Han population from Zhejiang Province, Eastern China" [Forensic Sci. Int. Genet. 5 (2011) e11-e13]. Expression of Concern: "Genetic population data of Yfiler Plus kit from 1434 unrelated Hans in Henan Province (Central China)" [Forensic Sci. Int. Genet. 22 (2016) e25-e27]. Expression of Concern: "Genetic profile of 17 Y chromosome STRs in the Guizhou Han population of southwestern China" [Forensic Sci. Int. Genet. 25 (2016) e6-e7].
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