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Forensic botany clues: Development of a novel Osmanthus fragrans STR multiplex system 法医植物学线索:一个新的桂花STR复合系统的发展
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-29 DOI: 10.1016/j.fsigen.2026.103440
Kewei Liang , Pengfei Li , Wei Zhang , Chun Shi , Bin Zhou , Ting Wu , Fu Ren , Fei Guo
Comprehensive research on human DNA genetic markers shows that short tandem repeats (STRs) have found extensive applications in individual identification and kinship testing. Botanical STRs are less commonly employed in forensic science due to the distinctive structure of plant cells and the incomplete state of genome sequencing. This study developed a novel 12-plex system for the individual identification of Osmanthus fragrans (O. fragrans), a species widely distributed across the world's temperate zones, to furnish essential botanical evidence for forensic investigations at crime scenes. Initially, a method for extracting plant DNA from trace samples was improved, which utilized glass beads to break cell walls and yielded significantly higher DNA quantities compared to the traditional method. Subsequently, five novel highly polymorphic STR loci (GHSTR1, GHSTR2, GHSTR4, GHSTR5, and GHSTR6) with trinucleotide repeats were identified from the O. fragrans reference genome (GCA_019395295.1) and characterized (expected heterozygosity > 0.8, polymorphic information content > 0.8, and power of discrimination > 0.9). These loci were integrated with seven previously reported loci (OF5, OF7, OF8, OF9, OF13, OF19, and OSM063) to establish a multiplex system. Developmental validation was conducted in accordance with ISFG and SWGDAM guidelines. The system demonstrated substantial species specificity, high sensitivity (optimal input: 50–500 pg), robust tolerance to common PCR inhibitors (e.g., ≤500 µM hematin and ≤400 ng/µL humic acid), and reliable performance in mixture studies (detecting minor contributors at 1:19–19:1 ratios). PCR conditions were further optimized to 58°C annealing, 20 min elongation, and 28 cycles. The system showed high precision (standard deviation <0.1 bp), accuracy (size deviation within ±0.5 bp), and inter-laboratory concordance. Population analysis of 273 samples revealed the high power of the system effectiveness (combined power of discrimination = 1 − 1.0045 ×10−19 and combined probability of exclusion = 0.993111589879955) despite observed Hardy-Weinberg equilibrium deviations. Ultimately, the system established definitive links between botanical evidence from suspects/victims and primary crime scenes in two real-world cases. In conclusion, the findings of the present study demonstrate the applicability of a novel STR multiplex system for individual identification of O. fragrans trace samples in forensic science. Without these forensic botany clues, these cases may not have been resolved.
对人类DNA遗传标记的全面研究表明,短串联重复序列在个体鉴定和亲属关系检测中有着广泛的应用。由于植物细胞的独特结构和基因组测序的不完整状态,植物STRs在法医科学中不太常用。摘要本研究建立了广泛分布于全球温带地区的桂花(Osmanthus fragrans, O. fragrans)的12-plex个体鉴定系统,为犯罪现场的法医调查提供必要的植物学证据。首先,改进了一种从痕量样品中提取植物DNA的方法,该方法利用玻璃珠打破细胞壁,与传统方法相比,获得了明显更高的DNA量。随后,从香豆参考基因组(GCA_019395295.1)中鉴定出5个具有三核苷酸重复的高多态性STR位点(GHSTR1、GHSTR2、GHSTR4、GHSTR5和GHSTR6),并对其进行了鉴定(预期杂合度>; 0.8,多态性信息含量>; 0.8,辨别力>; 0.9)。将这些基因座与之前报道的7个基因座(OF5、OF7、OF8、OF9、OF13、OF19和OSM063)整合,建立一个多路复用系统。根据ISFG和SWGDAM指南进行发展验证。该系统具有很强的物种特异性,灵敏度高(最佳输入:50-500 pg),对常见PCR抑制剂(例如,≤500 µM的血红素和≤400 ng/µL的腐植酸)具有很强的耐受性,并且在混合研究中表现可靠(以1:19-19:1的比例检测次要贡献者)。PCR条件进一步优化为58°C退火,20 min延伸,28个循环。该系统具有较高的精密度(标准偏差<;0.1 bp)、准确度(尺寸偏差在±0.5 bp以内)和实验室间一致性。273个样本的总体分析显示,尽管观察到Hardy-Weinberg平衡偏差,但系统有效性的高功率(联合辨别功率= 1 −1.0045 ×10−19,联合排除概率= 0.993111589879955)。最终,该系统在两个真实案例中建立了嫌疑人/受害者的植物证据与主要犯罪现场之间的明确联系。综上所述,本研究结果证明了一种新的STR多重识别系统在法医学中对香荷花痕量样品的个体鉴定的适用性。如果没有这些法医植物学线索,这些案件可能无法解决。
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引用次数: 0
Probabilistic genotyping of non-human DNA mixtures: Using MaSTR™ to analyze mixed canine STRs genotyped with DogFiler 非人类DNA混合物的概率基因分型:使用MaSTR™分析混合狗STRs基因分型与DogFiler
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-28 DOI: 10.1016/j.fsigen.2026.103436
Samantha L. Badgett , Teresa M. Tiedge , Taylor B. Parker , Kim R. Love , Natalie K. Flack , Kelly A. Meiklejohn
Individualization in forensic science is commonly achieved by typing short tandem repeats (STRs). Interpretation of resulting electropherograms can be challenging when the input DNA was low quantity, low quality or a mixture of two or more individuals. Probabilistic genotyping (PG) – application of mathematical models and algorithms to analyze mixed STR profiles – tools have been developed to compute a likelihood ratio that an individual is a contributor, and/or deconvolute the mixed profile into single source genotypes. While PG software has been widely implemented in human forensic laboratories, wildlife forensic laboratories have been slow to adopt given a) separate validations would be needed for each STR panel in use, and b) access to and selection of relevant population data needed for analysis could be challenging. This study looked to complete the first evaluation of PG software for the analysis of non-human STR mixtures. We utilized a continuous PG software, MaSTR™ (SoftGenetics), that permits the creation of a model for a non-human STR panel. Artificial mixtures of domestic dog were prepared at varied ratios and genotyped with the published DogFiler STR panel: 1) unrelated two individual (n = 12) and three individual (n = 3) mixtures, with varying degrees of allele sharing, and 2) related individuals (mother and offspring; n = 2) with high allele sharing. For each mixture, true contributor single source profiles were provided to MaSTR™ under varying propositions to assess the impact on the computed likelihood ratio (LR). Additionally for a subset of unrelated two-individual mixtures (n = 6), analyses with true non-contributors were completed to assess false inclusion rates. For replicate analyses (n = 5) on the same mixed profile, the coefficient of variation in the LogLR was 1.83 % and 2.42 %, for two-and three-individual mixtures, respectively. The overall false exclusion rate of true contributors was 0.43 % (LogLR < 6), and the false inclusion rate with true non-contributors was 0 % (LogLR > 6). Despite nearly half of the mixtures tested consisting of individuals with high levels of allele sharing, MaSTR™ was able to complete the analysis and give the expected result (inclusion or exclusion) regardless of the mixture ratio. These results provide promise for use of MaSTR™ (and PG more generally) in wildlife forensic casework. Laboratories interested in implementing PG will need to complete necessary validations and ideally include in testing STR profiles generated from adjudicated case samples, which was outside the scope of this study.
法医学的个性化通常是通过短串联重复序列(STRs)的分型来实现的。当输入的DNA是低数量、低质量或两个或更多个体的混合物时,所得到的电泳图的解释可能具有挑战性。概率基因分型(PG) -应用数学模型和算法来分析混合STR谱-已经开发出工具来计算个体是贡献者的似然比,和/或将混合谱解卷积为单一源基因型。虽然PG软件已广泛应用于人类法医实验室,但野生动物法医实验室采用的速度很慢,因为a)每个使用的STR面板需要单独验证,b)获取和选择分析所需的相关种群数据可能具有挑战性。本研究旨在完成PG软件用于分析非人类STR混合物的首次评估。我们使用了连续PG软件MaSTR™(SoftGenetics),该软件允许为非人类STR面板创建模型。采用DogFiler已发表的STR面板,按不同比例配制家养狗的人工混合物,并进行基因分型:1)不相关的两个体(n = 12)和三个体(n = 3)混合物,等位基因共享程度不同;2)相关个体(母犬和后代;n = 2)等位基因共享程度高。对于每种混合物,在不同的命题下,向MaSTR™提供了真正的贡献者单一源剖面,以评估对计算的似然比(LR)的影响。此外,对于不相关的两个体混合物的子集(n = 6),完成了真实非贡献者的分析,以评估错误的纳入率。对于相同混合剖面的重复分析(n = 5),对于两个和三个个体的混合物,LogLR的变异系数分别为1.83 %和2.42 %。真实贡献者的总体假排除率为0.43 % (LogLR < 6),真实非贡献者的总体假纳入率为0 % (LogLR < 6)。尽管近一半的测试混合物由具有高水平等位基因共享的个体组成,但无论混合物比例如何,MaSTR™都能够完成分析并给出预期结果(包括或排除)。这些结果为在野生动物法医案件工作中使用MaSTR™(以及更广泛的PG)提供了希望。有兴趣实施PG的实验室将需要完成必要的验证,理想情况下包括测试由裁决病例样本生成的STR概况,这超出了本研究的范围。
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引用次数: 0
Efficient DNA extraction and sequencing protocol for keratinised materials of animals 动物角化材料的高效DNA提取和测序方案
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-28 DOI: 10.1016/j.fsigen.2026.103437
Yongheng Zhou , Peng Gao , Liangyu Cui , Boyang Liu , Chang Su , Qi Zhang , Yue Ma , Tianming Lan , Shuhui Yang , Yanchun Xu
Keratinised tissues represent a valuable non-invasive biological source of mitochondrial and nuclear DNA and hold significant potential for genomic research. However, studies using genomic DNA from keratinised tissues (kmDNA) remain considerably limited, particularly in non-human species, with most studies focusing on human hair. The limited understanding of kmDNA quality constrains its application, particularly in contexts where high-quality DNA is scarce, such as in wildlife conservation and historical research. Thus, this study aimed to develop an efficient DNA extraction and whole-genome sequencing protocol for isolating DNA from diverse keratinised materials. The protocol incorporates several key improvements that enhance the recovery of endogenous DNA from highly degraded samples. This optimised workflow allowed the recovery of DNA fragments as short as 20–30 bp and increased the proportion of endogenous DNA (Rm) by over 20 % on average. The refined library preparation strategy increased sequencing chip utilisation (the ratio of actual output data to its theoretical maximum output) by more than 50 % in some samples. This study provides an optimised sequencing protocol for the systematic evaluation of DNA quality across common keratinised materials, establishing a robust methodological framework for the genetic analysis of complex degraded samples (e.g. historical or field-collected samples). These advancements significantly expand the practical boundaries of molecular biological research under non-ideal conditions.
角化组织是线粒体和核DNA有价值的非侵入性生物来源,在基因组研究中具有重要潜力。然而,使用角化组织基因组DNA (kmDNA)的研究仍然相当有限,特别是在非人类物种中,大多数研究都集中在人类头发上。对kmDNA质量的有限理解限制了它的应用,特别是在高质量DNA稀缺的环境中,如野生动物保护和历史研究。因此,本研究旨在开发一种高效的DNA提取和全基因组测序方案,用于从不同的角化材料中分离DNA。该方案包含了几个关键改进,提高了从高度降解样品中恢复内源性DNA的能力。这种优化的工作流程允许恢复短至20 - 30 bp的DNA片段,并将内源DNA (Rm)的比例平均增加20% %以上。在一些样本中,改进的文库制备策略将测序芯片的利用率(实际输出数据与其理论最大输出的比率)提高了50 %以上。本研究为系统评估常见角化材料的DNA质量提供了一个优化的测序方案,为复杂降解样品(例如历史或现场收集的样品)的遗传分析建立了一个强大的方法框架。这些进展极大地扩展了非理想条件下分子生物学研究的实际边界。
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引用次数: 0
Forensic Lab-on-a-Disc for enhanced sperm cell purification in differential extraction workflows 用于在不同提取工作流程中增强精子细胞纯化的法医实验室光盘。
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-26 DOI: 10.1016/j.fsigen.2026.103430
Un Na Koh , Vijaya Sunkara , Beomhee Ahn , Mi Kang Jung , Myunghee Jang , Hwanghee Ryu , Hanna Kim , Jihye Ahn , Kyusang Lee , Si-Keun Lim , Yoon-Kyoung Cho , Beomseok Lee
Efficient separation of sperm cells from mixed biological samples is critical in forensic DNA analysis, particularly in sexual assault investigations. Sperm separation in conventional differential extraction (cDE) methods is labor-intensive, time-consuming, and prone to sample loss, often compromising DNA recovery and quality. Here, we present the Forensic Lab-on-a-Disc, a centrifugal microfluidic device that enables rapid, semi-automated sperm cell and non-sperm DNA separation. Leveraging centrifugal force and tangential flow filtration with dual membranes (10 µm and 1 µm pore sizes), the device effectively separates sperm cells from epithelial cell lysates and debris. Optimization experiments identified a 10 µm pore size for the first filter as optimal for maximizing sperm cell recovery while depleting non-sperm DNA. A single washing cycle was sufficient to preserve male DNA ratio (defined as Y-DNA divided by total gDNA) while minimizing sperm loss. Comparative analyses showed that the Forensic Lab-on-a-Disc, which specifically replaces the sperm-cell separation step within the cDE workflow, outperforms the conventional method by delivering significantly higher male DNA ratio, faster processing times (∼6 min), and improved reproducibility. STR profiling confirmed male DNA recovery with minimal non-sperm DNA carryover, even in samples with epithelial-to-sperm DNA equivalent ratios as high as 1000:1. Featuring a compact, semi-automated, and multi-sample processing capability, the Forensic Lab-on-a-Disc reduces operator variability and minimizes non-sperm–derived lysate carryover risks that compromise mixture interpretation, offering a transformative solution to accelerate forensic DNA analysis in sexual assault cases.
从混合生物样本中有效分离精子细胞在法医DNA分析中至关重要,特别是在性侵犯调查中。在传统的差分提取(cDE)方法中,精子分离是劳动密集型的,耗时的,并且容易丢失样本,经常影响DNA的恢复和质量。在这里,我们展示了法医实验室光盘,一种离心微流体装置,可以快速、半自动地分离精子细胞和非精子DNA。利用离心力和切向流过滤双膜(10 µm和1 µm孔径),该设备有效地分离精子细胞从上皮细胞裂解物和碎片。优化实验确定了10 µm孔径的第一个过滤器最适合最大限度地恢复精子细胞,同时消耗非精子DNA。单次洗涤周期足以保持男性DNA比率(定义为Y-DNA除以总gDNA),同时最大限度地减少精子损失。对比分析表明,在cDE工作流程中专门取代精细胞分离步骤的Forensic Lab-on-a-Disc,通过提供显着更高的男性DNA比率、更快的处理时间(~ 6 min)和改进的可重复性,优于传统方法。STR分析证实,即使在上皮与精子DNA当量比率高达1000:1的样本中,男性DNA恢复与最小的非精子DNA携带。具有紧凑,半自动化和多样本处理能力,法医实验室光盘减少了操作人员的可变性,并最大限度地减少了非精子来源的溶解物携带风险,从而降低了混合解释的风险,为加速性侵犯案件的法医DNA分析提供了一种变革性的解决方案。
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引用次数: 0
Defining key criteria for microhaplotype locus selection in forensic genetics: Progress and recommendations by the Microhaplotype Working Group 定义法医遗传学中微单倍型位点选择的关键标准:微单倍型工作组的进展和建议
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-25 DOI: 10.1016/j.fsigen.2026.103421
Daniele Podini , Daniel S. Standage , Christopher Phillips , María de la Puente , Claus Børsting , Vania Pereira , Lucinda Davenport , David Ballard , Sarah E. Cavanaugh , Brian Young , Robert Lagacé , Kevin M. Kiesler , Fabio Oldoni , Pedro Rodriguez , Chiara Turchi , Robert A. Bever , Weibo Liang , Andrew Pakstis , Kenneth K. Kidd
The Microhaplotype Working Group (MWG) has made significant progress in defining key criteria for identifying microhaplotype (MH) loci that will enhance forensic genetics. The growing number of publications on MHs reflects increasing interest in these markers and highlights the need for greater standardization in the field. This paper summarizes the group's achievements since its formation following forensic community discussions at the 29th ISFG Congress in 2022. In this paper, we focus on locus nomenclature, allele definitions for MHs, and the challenges of marker identification and characterization. With the progress achieved on the core published MH locus database, MicroHapDB (https://github.com/bioforensics/MicroHapDB), it is now possible to use unique names for all currently published MHs. The MWG has reached a consensus on the critical marker characteristics for selecting MH loci for forensic use, with the effective number of alleles (Ae) metric as the primary selection parameter. Criteria for excluding otherwise suitable candidate MHs include genome location, length limitations, close physical linkage with forensic STRs, and sequence complexity considerations. Specifically, MHs in Long and Short Interspersed Nuclear Elements (LINEs and SINEs) and Long Terminal Repeats (LTRs) should be avoided, along with loci longer than ∼250 base pairs (bp). Finally, loci containing Indels or low complexity sequence patterns near their allele-defining SNPs should be excluded. MHs less than roughly 100 bp are potentially useful for typing degraded samples while those up to 250 bp are broadly useful and generally more informative if they include a higher average number of informative SNPs. The potential development of specialized MH panels for applications such as mixture deconvolution or biogeographic ancestry estimation is discussed. Considering these parameters, the MWG has identified 1148 loci theoretically suitable for forensic applications. The assembly of a final panel will maximize Ae while ensuring marker independence and loci with flanking sequence suitable for robust primer designs. This work serves as a foundation for the future selection of a core set of MH loci for forensic applications and development of recommendations for their implementation in forensic casework.
微单倍型工作组(MWG)在确定鉴定微单倍型(MH)基因座的关键标准方面取得了重大进展,这将增强法医遗传学。越来越多的关于mhh的出版物反映了人们对这些标记物的兴趣日益增加,并强调了该领域进一步标准化的必要性。本文总结了该小组自2022年第29届ISFG大会法医界讨论后成立以来的成就。在本文中,我们重点介绍了MHs的基因座命名法,等位基因定义,以及标记鉴定和表征的挑战。随着核心已发表MH位点数据库MicroHapDB (https://github.com/bioforensics/MicroHapDB)的进展,现在可以为所有当前已发表的MH使用唯一名称。MWG以有效等位基因数(effective number of alleles, Ae)度量为主要选择参数,对鉴定用MH位点的关键标记特征达成了共识。排除其他合适候选mh的标准包括基因组位置、长度限制、与法医str的密切物理联系以及序列复杂性考虑。具体来说,应该避免长、短穿插核元件(LINEs和sin)和长末端重复序列(LTRs)中的mh,以及长度超过250个碱基对(bp)的位点。最后,应排除含有indel的位点或其等位基因定义snp附近的低复杂度序列模式。小于大约100 bp的分子量对降解样品的分型可能有用,而大于250 bp的分子量则广泛有用,如果它们包含较高的信息snp的平均数量,则通常具有更多的信息。讨论了用于混合反褶积或生物地理祖先估计等应用的专用MH面板的潜在发展。考虑到这些参数,MWG已经确定了1148个理论上适合法医应用的基因座。最终面板的组装将最大限度地提高Ae,同时确保标记独立性和具有适合稳健引物设计的侧翼序列的位点。这项工作为未来选择一组核心MH基因座用于法医应用和制定在法医案件工作中实施的建议奠定了基础。
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引用次数: 0
When DNA leads the way: The introduction of Forensic Investigative Genetic Genealogy in Sweden and its first use in Europe 当DNA引领潮流:瑞典引入法医调查基因谱系及其在欧洲的首次使用
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-23 DOI: 10.1016/j.fsigen.2026.103432
Siri Aili Fagerholm , Ricky Ansell , Andreas Tillmar
This paper details the first successful use of Forensic Investigative Genetic Genealogy (FIGG) in Europe, which was applied to identify a double murder perpetrator in a 16-year-old unsolved case. By integrating advanced SNP typing with genetic genealogy methods, conclusive leads were generated beyond the reach of conventional forensic approaches. By using this case as an illustrative example, we describe how FIGG can expand the forensic toolkit, reshape investigative as well as forensic strategies, and enable resolution in long-standing unsolved cases. We also reflect on how this case highlights the need to balance technical progress in forensic genetics with legal, social, and ethical aspects. Finally, we outline the journey initiated with this successful pilot case to the structured implementation of FIGG as an operational tool within the Swedish Law Enforcement.
本文详细介绍了欧洲首次成功使用法医调查基因谱系(FIGG),该技术被用于识别一宗16年未破案件中的双重谋杀肇事者。通过整合先进的SNP分型与遗传谱系方法,结论性的线索产生超出了传统的法医方法。通过使用这个案例作为说说性的例子,我们描述了FIGG如何扩展法医工具包,重塑调查和法医策略,并使长期未解决的案件得以解决。我们还反思了这个案例如何突出了在法律、社会和伦理方面平衡法医遗传学技术进步的必要性。最后,我们概述了从这个成功的试点案例开始的旅程,以结构化地实施FIGG作为瑞典执法部门的操作工具。
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引用次数: 0
Stolen babies in Spain: The long and winding search for an illegally adopted daughter 西班牙被盗婴儿:寻找非法收养的女儿漫长而曲折的过程
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-22 DOI: 10.1016/j.fsigen.2026.103431
Antonio Alonso , Pablo Martín , Manuel López , Manuel Crespillo , María José Farfán
This paper delves into the complex and protracted search for origins by individuals illegally adopted in Spain, using the emblematic case of Inés Madrigal as a central narrative. It examines the historical context surrounding allegations of widespread newborn abduction and irregular adoptions, addressing the discrepancy between unsubstantiated claims of 300,000 cases and the findings of official investigations. The article analyzes the critical role of forensic science, particularly DNA analysis of exhumed remains and hospital biopsies, in investigating these allegations. The findings of the National Institute of Toxicology and Forensic Sciences are discussed, highlighting that in a majority of investigated cases involving alleged newborn abduction in public hospitals, DNA analysis confirmed the deceased status of the infants, challenging the widespread narrative of systematic baby snatching. Furthermore, the paper explores the pivotal application of direct-to-consumer genetic genealogy testing in the case of Inés Madrigal, which ultimately led to the identification of her biological family despite the lack of matches in traditional forensic DNA databases. The legal journey of Inés Madrigal, including the landmark trial against Dr. Eduardo Vela and the subsequent rulings by the Provincial Court and the Supreme Court, are analyzed, underscoring the legal complexities and the issue of prescription in these cases. Finally, the article discusses the future role of forensic sciences in assisting illegally adopted individuals, emphasizing the need for enhanced collaboration between affected associations and state administration, promoting the use of available public services like the Ministry of Justice's information service and DNA database, and considering the potential of a regulated forensic genetic genealogy program. The paper underscores the importance of forensic investigations in uncovering the truth, providing justice for victims, and differentiating between cases of newborn abduction and irregular adoptions where parental consent may have been coerced or absent.
这篇论文深入研究了西班牙非法收养的人对血统的复杂而漫长的寻找,用insamas Madrigal的象征性案例作为中心叙述。报告审查了有关广泛绑架新生儿和非法收养指控的历史背景,处理了关于30万起案件的未经证实的说法与官方调查结果之间的差异。本文分析了法医科学,特别是对挖掘出的遗骸进行DNA分析和医院活检,在调查这些指控方面的关键作用。本文讨论了国家毒理学和法医科学研究所的调查结果,强调指出,在大多数涉及公立医院涉嫌绑架新生儿的调查案件中,DNA分析证实了婴儿的死亡状态,挑战了普遍存在的有系统地绑架婴儿的说法。此外,本文探讨了直接面向消费者的基因谱系测试在insamims Madrigal案例中的关键应用,尽管传统的法医DNA数据库中缺乏匹配,但最终确定了她的亲生家庭。本文分析了insamas Madrigal的法律历程,包括对Eduardo Vela博士的具有里程碑意义的审判以及省法院和最高法院随后作出的裁决,强调了这些案件中的法律复杂性和处方问题。最后,文章讨论了法医学在帮助非法被收养者方面的未来作用,强调了加强受影响协会和国家行政部门之间合作的必要性,促进了现有公共服务的使用,如司法部的信息服务和DNA数据库,并考虑了监管法医学遗传家谱计划的潜力。该文件强调了法医调查在揭露真相、为受害者伸张正义、区分新生儿绑架案件和非法收养案件方面的重要性,在非法收养案件中,父母可能是被迫或不同意的。
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引用次数: 0
A strategy for body fluid mixture analysis using semen- and epidermis-specific tDMRs and adjacent microhaplotypes/SNPs 精液和表皮特异性tDMRs及邻近微单倍型/ snp的体液混合物分析策略
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-17 DOI: 10.1016/j.fsigen.2026.103429
Sang Un Park , Bo Min Kim , Soyi Park , Hwan Young Lee
Forensic evidence derived from semen or epidermis is often found mixed with other body fluids, and analysis becomes particularly challenging when DNA from multiple contributors is present in similar proportions. In addition, even when tissue or body fluid are successfully identified from mixtures, determining the donor of each tissue remains difficult. To overcome these limitations, we developed and applied a combined genetic marker containing semen- or epidermis-specific methylated CpGs and nearby microhaplotypes (MHs) or single nucleotide polymorphisms (SNPs). DNA methylation array data from 29 samples—including semen, epidermis, blood, saliva, vaginal fluid, and menstrual blood—were used to identify tissue-specific CpGs. Public SNP database and blood DNA from 300 Korean individuals were further used to identify nearby MHs. In total, 21 CpG-MH loci including 16 semen-specific methylated CpGs and five epidermis-specific methylated CpGs were selected. Enzymatic conversion followed by massively parallel sequencing (MPS) was performed on 49 samples, including 16 single-source samples and 33 semen- or epidermis-containing mixtures with a 1:1 ratio, to simultaneously analyze the target CpGs and MHs. We performed tissue-specific DNA profiling using methylation status at the target CpGs. The assay demonstrated that, in mixed profiles with a 1:1 ratio—previously difficult to interpret using conventional methods—non-target tissue alleles could be effectively excluded, leaving predominantly target tissue alleles. Although tissue-specific DNA profiling requires more sophisticated modeling that accounts for allele zygosity, allele dropout, and a larger number of markers to ensure sufficient individual discrimination power, the CpG-MH assay is capable of extracting valuable information even from mixtures with similar proportions of two contributors, including semen or epidermis.
来自精液或表皮的法医证据经常与其他体液混合,当来自多个供体的DNA以相似比例存在时,分析变得特别具有挑战性。此外,即使成功地从混合物中识别出组织或体液,确定每个组织的供体仍然很困难。为了克服这些局限性,我们开发并应用了一种包含精液或表皮特异性甲基化CpGs和附近微单倍型(MHs)或单核苷酸多态性(SNPs)的组合遗传标记。来自29个样本(包括精液、表皮、血液、唾液、阴道液和经血)的DNA甲基化阵列数据用于鉴定组织特异性CpGs。进一步使用公共SNP数据库和300名韩国人的血液DNA来确定附近的mh。共筛选到21个CpG-MH位点,包括16个精液特异性甲基化CpGs和5个表皮特异性甲基化CpGs。对49份样品(包括16份单源样品和33份含精液或表皮混合物,比例为1:1)进行酶转化后大规模平行测序(MPS),同时分析目标CpGs和mhh。我们利用目标CpGs的甲基化状态进行了组织特异性DNA分析。该分析表明,在1:1比例的混合谱中(以前很难用常规方法解释),非靶组织等位基因可以有效地排除,留下主要的靶组织等位基因。尽管组织特异性DNA分析需要更复杂的模型来解释等位基因合合性、等位基因缺失和更多的标记,以确保足够的个体辨别能力,CpG-MH分析甚至能够从两个贡献者(包括精液或表皮)比例相似的混合物中提取有价值的信息。
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引用次数: 0
An evaluation of ForenSeq DNA Signature Prep iiSNP mixture interpretation using a probabilistic genotyping method 使用概率基因分型方法评估ForenSeq DNA Signature Prep iiSNP混合解释。
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-17 DOI: 10.1016/j.fsigen.2026.103428
Kevin Cheng, Jo-Anne Bright
The analysis of autosomal short tandem repeat markers (STRs) using capillary electrophoresis (CE) technology remains the dominant method for forensic investigations globally. However, next-generation sequencing technologies are increasingly being adopted as they enable simultaneous amplification of both STR and SNP (single-nucleotide polymorphisms) loci in large panels, amongst other benefits. Unlike STRs, which are highly variable or polymorphic, the majority of SNPs are biallelic, meaning there are only two allelic variants. A single SNP marker on its own is unlikely to provide as much evidentiary value as a single STR marker. However, the interpretation of SNP markers from mixed DNA evidence is computationally simpler than that of STR markers because they do not produce stutter artefacts and, being biallelic, there are fewer possible genotype combinations. SNPs are increasingly recognised as valuable markers, complementary to STRs, and have been proven to be useful for applications including kinship analyses, informing ancestry, providing phenotypic characters for investigative leads, or forensic investigative genetic genealogy. The most common approach for the interpretation of autosomal STR (aSTR) profiles developed using CE technology within the US, UK, and Australasia is now based on probabilistic genotyping methods. Some of these published and tested models have been applied to aSTR profiles developed using NGS technologies and in this paper, we investigate the application of one such model (STRmix™ NGS) to the interpretation of mixed SNP profiles. Comparisons of likelihood ratios (LRs) assigned to donors and non-donors show expected trends in single-source profiles. However, in more complex mixtures, the system’s ability to differentiate between true and false donors diminishes quickly. This is consistent with theoretical limitations for biallelic markers. While this study is limited to the 94 iiSNPs (identity informative SNPs) included in the ForenSeq kit, the findings suggest that simple SNP profiles can be interpreted within the existing STRmix™ NGS framework. This provides another potential tool for SNP profile analysis and lays the foundation for future joint interpretation of STR and SNP markers, or assays with more SNP markers.
利用毛细管电泳(CE)技术分析常染色体短串联重复标记(STRs)仍然是全球法医调查的主要方法。然而,下一代测序技术越来越多地被采用,因为它们可以同时扩增STR和SNP(单核苷酸多态性)位点,以及其他好处。与高度可变或多态的str不同,大多数snp是双等位基因,这意味着只有两个等位基因变体。单个SNP标记本身不太可能提供与单个STR标记一样多的证据价值。然而,从混合DNA证据中解释SNP标记在计算上比STR标记简单,因为它们不会产生口吃伪影,而且由于是双等位基因,可能的基因型组合较少。snp越来越被认为是有价值的标记,与str互补,并已被证明在亲属分析、告知祖先、为调查线索提供表型特征或法医调查遗传谱系等应用中很有用。在美国、英国和澳大利亚,使用CE技术开发的常染色体STR (aSTR)谱的最常见解释方法现在是基于概率基因分型方法。其中一些已发表和测试的模型已应用于使用NGS技术开发的aSTR剖面,在本文中,我们研究了其中一种模型(STRmix™NGS)在混合SNP剖面解释中的应用。分配给捐助者和非捐助者的可能性比(LRs)的比较显示了单一来源概况的预期趋势。然而,在更复杂的混合物中,该系统区分真假供者的能力迅速下降。这与双等位基因标记的理论局限性是一致的。虽然这项研究仅限于包含在ForenSeq试剂盒中的94个iiSNPs(身份信息SNP),但研究结果表明,简单的SNP谱可以在现有的STRmix™NGS框架内解释。这为SNP谱分析提供了另一种潜在的工具,并为未来STR和SNP标记的联合解释或使用更多SNP标记的分析奠定了基础。
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引用次数: 0
Genetic and isotopic analyses of medieval skeletons (1150–1349) at St. Peter’s churchyard, Berlin/Cölln, Germany 柏林圣彼得教堂墓地中世纪骨骼(1150-1349)的遗传和同位素分析/Cölln,德国
IF 3.1 2区 医学 Q2 GENETICS & HEREDITY Pub Date : 2026-01-16 DOI: 10.1016/j.fsigen.2026.103427
Kristin Rath , Marion Tichomirowa , Alexandra Käßner , Jessica Rothe , Kristina Killgrove , Martin Bodner , Sascha Willuweit , Claudia Melisch , Marion Nagy
The medieval market Berlin, nucleus and starting point of what eventually became Germany’s capital, was mirrored by another medieval settlement named Cölln (Lat. colonia) on the opposite side of the Spree River. In Cölln, St. Peter’s cemetery was in use from about 1150–1717. In this study we investigated individuals from the earliest graves of this cemetery regarding their geographic origin using genetic analyses on bones and teeth as well isotopic analyses on dental enamel. Genetic analysis of 96 individuals was done for 16 autosomal STRs as well as the amelogenin marker for sex determination. We identified 54 unrelated males, who were typed for 27 Y-chromosomal STRs and assigned to 12 different Y-haplogroups. The Y-haplogroup distribution of St. Peter’s showed a high similarity to the population of present-day Germany with high amounts of both R1a (31.5 %) and R1b (44.4 %) as well as I1 (11.1 %) and I2a (7.4 %). Geographic ancestry prediction, using AMOVA analysis, revealed a high genetic similarity between the populations of St. Peter’s and the present-day German population. Significant differences could be detected for neighboring western and eastern European populations. MtDNA typing for all 96 individuals using coding region SNPs demonstrated a characteristic European distribution with haplogroups H (46.9 %), U (17.7 %), T (12.5 %), J (7.3 %) and K (8.3 %). Further typing for 48 individuals was done by sequencing the full mtDNA control region, revealing only trace amounts of Slavic-associated haplogroups. The strontium and oxygen isotope analysis of 66 of the earliest graves showed that most individuals came from the Berlin-Brandenburg area and the adjacent regions, with signs of migration limited to a few individuals.
中世纪的市场柏林,最终成为德国首都的核心和起点,反映了另一个名为Cölln (Lat)的中世纪定居点。施普雷河对岸的殖民地。在Cölln,圣彼得公墓从1150年到1717年一直在使用。在这项研究中,我们通过对骨骼和牙齿的遗传分析以及对牙釉质的同位素分析,调查了该墓地最早坟墓中的个体的地理来源。对96例个体进行了16例常染色体STRs的遗传分析,并进行了变性原蛋白标记。我们鉴定了54名没有血缘关系的男性,他们被分型为27个y染色体STRs,并被分配到12个不同的y单倍群。圣彼得的y -单倍群分布显示出与当今德国人口的高度相似性,R1a(31.5 %)和R1b(44.4 %)以及I1(11.1 %)和I2a(7.4 %)的数量都很高。地理祖先预测,使用AMOVA分析,揭示了在圣彼得的人口和今天的德国人口之间高度的遗传相似性。在邻近的西欧和东欧人群中可以发现显著差异。使用编码区snp对96名个体进行MtDNA分型,结果显示单倍群H(46.9 %)、U(17.7 %)、T(12.5 %)、J(7.3 %)和K(8.3 %)具有典型的欧洲分布特征。通过对整个mtDNA控制区进行测序,对48个人进行了进一步的分型,只发现了微量的斯拉夫相关单倍群。对66个最早的坟墓进行的锶和氧同位素分析表明,大多数个体来自柏林-勃兰登堡地区及其邻近地区,只有少数个体有迁移的迹象。
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引用次数: 0
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Forensic Science International-Genetics
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