Detecting the saddling deformations in nickel meso-phenyl substituted porphyrins using low-frequency Raman characteristic peaks

Shenhao Wang , Qing Huang
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Abstract

The out-of-plane (OOP) deformations of metalloporphyrins macrocycle are closely related to their biological functions, and Raman spectroscopy is a powerful tool for investigating OOP deformations. However, due to the interplay of electronic structure, substituents, porphyrin macrocycle in-plane (IP) and OOP deformations, it is challenging to measure the OOP deformations directly, or, establish a confirmative correlation between the frequency shifts of characteristic peaks and specific OOP deformation changes. In this work, we first selected the model porphyrin Ni-P and employed DFT calculations to explore the relationship between the ruffling and saddling deformation changes and their corresponding Raman spectral differences. Subsequently, we focused on nickel meso-tetraphenyl porphyrin (NiTPP), nickel meso-tetrachlorophenylporphyrin (NiTClP), and nickel meso-tetramethoxyphenyl porphyrin (NiTMeOP), which are structurally similar in nature, and investigated the relationship between their OOP deformations and Raman spectra bands based on both experiments and DFT calculations. The results indicate that the ruffling deformation magnitudes of the three nickel porphyrins are almost identical, while the saddling deformation magnitudes differ remarkably. The frequency change of the characteristic peak γ18 in relation to saddling deformation of the three porphyrins is 7.7cm-1/Å, which is close to that of the model porphyrin Ni-P 10.6cm-1/Å. Therefore, the characteristic peak γ18 can be used as a “reporter” for the change in saddling deformation. As such, this work demonstrates how to utilize the frequency shifts of low-frequency Raman characteristic peaks to identify the OOP deformation changes of the porphyrin macrocycle caused by variations in the external environment, thereby providing a theoretically assisted tool for revealing the reasons for their biological function variations.

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利用低频拉曼特征峰检测镍中苯基取代卟啉的鞍形变形。
金属卟啉大环的面外变形与其生物学功能密切相关,而拉曼光谱是研究金属卟啉大环面外变形的有力工具。然而,由于电子结构、取代基、卟啉面内大环(IP)与OOP变形的相互作用,直接测量OOP变形或建立特征峰频移与OOP具体变形变化之间的确切相关性具有挑战性。在这项工作中,我们首先选择了模型卟啉Ni-P,并采用DFT计算来探索褶边和鞍形变形变化与其对应的拉曼光谱差异之间的关系。随后,我们重点研究了结构性质相似的镍中四苯基卟啉(NiTPP)、镍中四氯苯基卟啉(NiTClP)和镍中四甲基氧基卟啉(NiTMeOP),并基于实验和DFT计算研究了它们的OOP变形与拉曼光谱带的关系。结果表明,三种镍卟啉的褶皱变形量基本相同,而鞍形变形量差异较大。三种卟啉的马鞍变形特征峰γ - 18的频率变化为7.7cm-1/Å,与模型卟啉Ni-P的10.6cm-1/Å接近。因此,特征峰γ - 18可以作为鞍形变形变化的“报告者”。因此,本工作展示了如何利用低频拉曼特征峰的频移来识别外部环境变化引起的卟啉大环的OOP变形变化,从而为揭示其生物功能变化的原因提供了理论上的辅助工具。
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来源期刊
CiteScore
8.40
自引率
11.40%
发文量
1364
审稿时长
40 days
期刊介绍: Spectrochimica Acta, Part A: Molecular and Biomolecular Spectroscopy (SAA) is an interdisciplinary journal which spans from basic to applied aspects of optical spectroscopy in chemistry, medicine, biology, and materials science. The journal publishes original scientific papers that feature high-quality spectroscopic data and analysis. From the broad range of optical spectroscopies, the emphasis is on electronic, vibrational or rotational spectra of molecules, rather than on spectroscopy based on magnetic moments. Criteria for publication in SAA are novelty, uniqueness, and outstanding quality. Routine applications of spectroscopic techniques and computational methods are not appropriate. Topics of particular interest of Spectrochimica Acta Part A include, but are not limited to: Spectroscopy and dynamics of bioanalytical, biomedical, environmental, and atmospheric sciences, Novel experimental techniques or instrumentation for molecular spectroscopy, Novel theoretical and computational methods, Novel applications in photochemistry and photobiology, Novel interpretational approaches as well as advances in data analysis based on electronic or vibrational spectroscopy.
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