Apparent timescaling of fossil diversification rates is caused by sampling bias.

IF 7.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Current Biology Pub Date : 2025-02-24 Epub Date: 2025-01-23 DOI:10.1016/j.cub.2024.12.038
Bouwe R Reijenga, Roger A Close
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Abstract

Negative scaling relationships between both speciation and extinction rates, on the one hand, and the age or duration of organismal groups on the other, are pervasive and recovered in both molecular phylogenetic and fossil time series.1,2,3,4 The agreement between molecular and fossil data hints at a universal cause and potentially at incongruence between micro- and macroevolution. However, the existence of negative rate scaling in fossil time series has not undergone the same level of scrutiny as in molecular data. Here, we analyze the marine animal fossil record across the last ∼538.8 Ma of the Phanerozoic to investigate the presence and strength of negative rate scaling. We find that negative rate scaling arises under commonly applied age range-based per capita rates, which do not control for sampling bias, but are severely reduced or absent when metrics are used that do correct for sampling. We further show by simulation that even moderately incomplete sampling of species occurrences through time may induce rate scaling. We thus conclude that there are no significant scaling relationships present in these fossil clades and that any apparent trend is caused by sampling artefacts and taxonomic practices. If rate scaling in molecular phylogenies is genuine, the absence of such a relationship in the fossil record will provide a valuable benchmark and constraint on what processes can cause it.

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化石多样化率的明显时间尺度是由抽样偏差引起的。
在分子系统发育和化石时间序列中,物种形成和灭绝率与生物类群的年龄或持续时间之间的负比例关系普遍存在并得到恢复。1,2,3,4分子和化石数据之间的一致暗示了一个普遍的原因,也可能是微观和宏观进化之间的不一致。然而,化石时间序列中负速率标度的存在并没有像在分子数据中那样经历同样程度的审查。在此,我们分析了显生宙最后~ 538.8 Ma的海洋动物化石记录,以研究负速率标度的存在和强度。我们发现,在通常应用的基于年龄范围的人均比率下,会出现负比率标度,这不能控制抽样偏差,但当使用正确的抽样指标时,会严重减少或不存在。我们进一步通过模拟表明,即使物种随时间发生的适度不完整采样也可能引起速率缩放。因此,我们得出结论,在这些化石分支中不存在显著的尺度关系,任何明显的趋势都是由采样人工制品和分类学实践引起的。如果分子系统发育中的速率缩放是真实的,那么化石记录中这种关系的缺失将为哪些过程可能导致速率缩放提供一个有价值的基准和约束。
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来源期刊
Current Biology
Current Biology 生物-生化与分子生物学
CiteScore
11.80
自引率
2.20%
发文量
869
审稿时长
46 days
期刊介绍: Current Biology is a comprehensive journal that showcases original research in various disciplines of biology. It provides a platform for scientists to disseminate their groundbreaking findings and promotes interdisciplinary communication. The journal publishes articles of general interest, encompassing diverse fields of biology. Moreover, it offers accessible editorial pieces that are specifically designed to enlighten non-specialist readers.
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