Kinetic and structural investigation of the 4-allyl syringol oxidase from Streptomyces cavernae

IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Archives of biochemistry and biophysics Pub Date : 2025-03-01 Epub Date: 2025-01-25 DOI:10.1016/j.abb.2025.110320
Daniel Eggerichs , Heiner G. Weddeling , Laura Alvigini , Tobias Rapsch , Nils Weindorf , Andrea Mattevi , Dirk Tischler
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Abstract

4-Phenol oxidases are proposed to be involved in the utilization of lignin-derived aromatic compounds. While enzymes with selectivity towards 4-hydroxyphenyl and guaiacyl motifs are well described, we identified the first syringyl-specific oxidase from Streptomyces cavernae (Sc4ASO) only very recently. Here, in-depth studies were conducted to unravel the molecular origins of the outstanding selectivity of Sc4ASO. Kinetic experiments revealed high activities on dimethoxylated substrates (up to 2.9 ± 0.1 s−1), but also strong cooperativity between both protein subunits, as well as substrate inhibition in dependency of ortho methoxylation and chain length of the para substituent. Rapid mixing kinetics in combination with the determination of the crystal structure in complex with three substrates allowed to connect the kinetic behavior with never-observed positioning of the conserved residue Y471. Ultimately, the catalytic potential of Sc4ASO was investigated in a 100 mL scale cascade reaction to produce the natural product syringaresinol.

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洞穴链霉菌4-烯丙基丁香酚氧化酶的动力学和结构研究。
4-酚氧化酶被认为参与木质素衍生芳香族化合物的利用。虽然对4-羟基苯基和愈创木酰基基具有选择性的酶已经被很好地描述,但我们最近才从洞穴链霉菌(Sc4ASO)中发现了第一个丁香基特异性氧化酶。在这里,我们进行了深入的研究,以揭示Sc4ASO出色选择性的分子起源。动力学实验表明,该蛋白在二甲氧基化底物上具有较高的活性(高达2.9±0.1 s-1),而且两种蛋白亚基之间具有较强的协同性,并且对底物的抑制作用依赖于邻甲氧基化和对取代基的链长。快速混合动力学结合对三底物配合物晶体结构的测定,可以将动力学行为与从未观察到的保守残留物Y471的定位联系起来。最终,在100 mL级联反应中考察了Sc4ASO的催化潜力,以生产天然产物丁香甲醇。
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来源期刊
Archives of biochemistry and biophysics
Archives of biochemistry and biophysics 生物-生化与分子生物学
CiteScore
7.40
自引率
0.00%
发文量
245
审稿时长
26 days
期刊介绍: Archives of Biochemistry and Biophysics publishes quality original articles and reviews in the developing areas of biochemistry and biophysics. Research Areas Include: • Enzyme and protein structure, function, regulation. Folding, turnover, and post-translational processing • Biological oxidations, free radical reactions, redox signaling, oxygenases, P450 reactions • Signal transduction, receptors, membrane transport, intracellular signals. Cellular and integrated metabolism.
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