Characterizing Conical Intersections of Nucleobases on Quantum Computers.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2025-02-11 Epub Date: 2025-01-28 DOI:10.1021/acs.jctc.4c01434
Yuchen Wang, Cameron Cianci, Irma Avdic, Rishab Dutta, Samuel Warren, Brandon Allen, Nam P Vu, Lea F Santos, Victor S Batista, David A Mazziotti
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Abstract

Hybrid quantum-classical computing algorithms offer significant potential for accelerating the calculation of the electronic structure of strongly correlated molecules. In this work, we present the first quantum simulation of conical intersections (CIs) in a biomolecule, cytosine, using a superconducting quantum computer. We apply the contracted quantum eigensolver (CQE)─with comparisons to conventional variational quantum deflation (VQD)─to compute the near-degenerate ground and excited states associated with the conical intersection, a key feature governing the photostability of DNA and RNA. The CQE is based on an exact ansatz for many-electron molecules in the absence of noise─a critically important property for resolving strongly correlated states at CIs. Both methods demonstrate promising accuracy when compared with exact diagonalization, even on noisy intermediate-scale quantum computers, highlighting their potential for advancing the understanding of photochemical and photobiological processes. The ability to simulate these intersections is critical for advancing our knowledge of biological processes like DNA repair and mutation, with potential implications for molecular biology and medical research.

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在量子计算机上表征核碱基的锥形相交。
混合量子经典计算算法为加速计算强相关分子的电子结构提供了巨大的潜力。在这项工作中,我们首次使用超导量子计算机对生物分子胞嘧啶中的锥形交叉点(CIs)进行了量子模拟。我们应用收缩量子特征解算器(CQE)──与传统变分量子紧缩(VQD)相比较──来计算与圆锥相交相关的近简并基态和激发态,这是控制DNA和RNA光稳定性的关键特征。CQE是基于在没有噪声的情况下对多电子分子的精确分析──这是在CIs中分辨强相关态的一个至关重要的性质。与精确对角化相比,即使在嘈杂的中等规模量子计算机上,这两种方法都显示出有希望的准确性,突出了它们在促进对光化学和光生物过程的理解方面的潜力。模拟这些交叉点的能力对于提高我们对DNA修复和突变等生物过程的认识至关重要,对分子生物学和医学研究具有潜在的意义。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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