MOSAEC-DB: a comprehensive database of experimental metal–organic frameworks with verified chemical accuracy suitable for molecular simulations†

IF 7.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Chemical Science Pub Date : 2025-01-31 DOI:10.1039/D4SC07438F
Marco Gibaldi, Anna Kapeliukha, Andrew White, Jun Luo, Robert Alex Mayo, Jake Burner and Tom K. Woo
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Abstract

Ongoing developments in computational databases seek to improve the accessibility and breadth of high-throughput screening and materials discovery efforts. Their reliance on experimental crystal structures necessitates significant processing prior to computation in order to resolve any crystallographic disorder or partial occupancies and remove any residual solvent molecules in the case of activated porous materials. Contemporary investigations revealed that deficiencies in the experimental characterization and computational preprocessing methods generated considerable occurrence of structural errors in metal–organic framework (MOF) databases. The MOSAEC MOF database (MOSAEC-DB) tackles these structural reliability concerns through utilization of innovative preprocessing and error analysis protocols applying the concepts of oxidation state and formal charge to exclude erroneous crystal structures. Comprising more than 124k crystal structures, this work maintains the largest and most accurate dataset of experimental MOFs ready for immediate deployment in molecular simulations. The databases' comparative diversity is demonstrated through its enhanced coverage of the periodic table, expansive quantity of structures, and balance of chemical properties relative to existing MOF databases. Chemical and geometric descriptors, as well as DFT electrostatic potential-fitted charges, are included to facilitate subsequent atomistic simulation and machine-learning (ML) studies. Curated subsets—sampled according to their chemical properties and structural uniqueness—are also provided to further enable ML studies in recognition of the strict demand for duplicate structure elimination and dataset diversity in such applications.

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MOSAEC-DB:一个综合的实验金属有机框架数据库,具有经过验证的化学精度,适合分子模拟
计算数据库的持续发展旨在提高高通量筛选和材料发现工作的可及性和广度。它们依赖于实验晶体结构,需要在计算之前进行重要的处理,以解决任何晶体学紊乱或部分占位,并在活化多孔材料的情况下去除任何残留的溶剂分子。当代研究表明,实验表征和计算预处理方法的缺陷导致金属有机框架(MOF)数据库中出现相当大的结构误差。MOSAEC MOF数据库(MOSAEC- db)通过利用创新的预处理和错误分析协议,应用氧化态和形式电荷的概念来排除错误的晶体结构,解决了这些结构可靠性问题。包括超过124k晶体结构,这项工作保持了最大和最准确的实验mof数据集,准备立即部署在分子模拟中。与现有的MOF数据库相比,该数据库的相对多样性体现在其增强的周期表覆盖范围、结构数量的扩大和化学性质的平衡上。包括化学和几何描述符,以及DFT静电电位拟合电荷,以促进随后的原子模拟和机器学习(ML)研究。还提供了根据其化学性质和结构独特性进行采样的精选子集,以进一步使ML研究能够识别此类应用中对重复结构消除和数据集多样性的严格要求。
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来源期刊
Chemical Science
Chemical Science CHEMISTRY, MULTIDISCIPLINARY-
CiteScore
14.40
自引率
4.80%
发文量
1352
审稿时长
2.1 months
期刊介绍: Chemical Science is a journal that encompasses various disciplines within the chemical sciences. Its scope includes publishing ground-breaking research with significant implications for its respective field, as well as appealing to a wider audience in related areas. To be considered for publication, articles must showcase innovative and original advances in their field of study and be presented in a manner that is understandable to scientists from diverse backgrounds. However, the journal generally does not publish highly specialized research.
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