Effects of the physico-chemical properties of amino acids and chemically functionalized surfaces on DIOS-MS analysis

IF 2.5 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Analytical biochemistry Pub Date : 2025-05-01 Epub Date: 2025-01-30 DOI:10.1016/j.ab.2025.115792
Antonin Lavigne , Thomas Géhin , Benoît Gilquin , Laetitia-Eiko Xerri , Marc Veillerot , Vincent Jousseaume , Yann Chevolot , Magali Phaner-Goutorbe , Christelle Yeromonahos
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Abstract

Desorption ionization on silicon mass spectrometry (DIOS-MS) allows for the detection of low molecular weight species from fluid samples. However, this method remains scarcely used for clinical diagnosis likely because of a lack of knowledge about the desorption/ionization mechanism as well as about the interplay between the surface and analyte properties which are effective in desorption/ionization, impeding the optimization of the DIOS-MS analysis.
Herein, the normalized intensity of the DIOS-MS peaks at [M+H]+ of seven amino acids on four different porous silicon modified surfaces are investigated. These amino acids (arginine, phenylalanine, methionine, glutamine, leucine, cysteine and valine) have different isoelectric points, proton affinities, and octanol-water partition coefficients. The four selected surfaces were oxidized porous silicon (SiO2), the same porous silicon modified with a propyl dimethyl ethoxy silane, octadecyl dimethyl ethoxy silane or 3 amino propyl dimethyl ethoxy silane (CH3-short, CH3-long and NH3+, respectively). These surfaces present different electrical charges, alkyl chain lengths, and hydrophilic/hydrophobic properties. For each surface, the intensities of the protonated molecules ([M+H]+) are discussed with respect to the electrical charge and proton affinity of the amino acids, their z-distributions inside the pores (determined by time of flight secondary ion mass spectrometry profiling), their surface interaction energies (calculated by molecular dynamics simulations), the interfacial water content and the proton availability for each surface.

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氨基酸和化学功能化表面的理化性质对DIOS-MS分析的影响。
硅质谱(DIOS-MS)上的解吸电离允许从流体样品中检测低分子量物种。然而,由于缺乏对解吸/电离机制的了解,以及对有效解吸/电离的表面和被分析物性质之间的相互作用的了解,这种方法仍然很少用于临床诊断,阻碍了DIOS-MS分析的优化。本文研究了七种氨基酸在四种不同的多孔硅修饰表面上的[M+H]+的DIOS-MS峰的归一化强度。这些氨基酸(精氨酸、苯丙氨酸、蛋氨酸、谷氨酰胺、亮氨酸、半胱氨酸和缬氨酸)具有不同的等电点、质子亲和力和辛醇-水分配系数。所选择的4个表面分别是氧化多孔硅(SiO2)、用丙基二甲基乙氧基硅烷、十八烷基二甲基乙氧基硅烷或3氨基丙基二甲基乙氧基硅烷(CH3-short、CH3-long和NH3+)修饰的多孔硅。这些表面呈现出不同的电荷、烷基链长度和亲疏水性。对于每个表面,质子化分子([M+H]+)的强度与氨基酸的电荷和质子亲和力、它们在孔隙内的z分布(由飞行时间次级离子质谱分析决定)、它们的表面相互作用能(通过分子动力学模拟计算)、界面含水量和每个表面的质子可用性有关。
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来源期刊
Analytical biochemistry
Analytical biochemistry 生物-分析化学
CiteScore
5.70
自引率
0.00%
发文量
283
审稿时长
44 days
期刊介绍: The journal''s title Analytical Biochemistry: Methods in the Biological Sciences declares its broad scope: methods for the basic biological sciences that include biochemistry, molecular genetics, cell biology, proteomics, immunology, bioinformatics and wherever the frontiers of research take the field. The emphasis is on methods from the strictly analytical to the more preparative that would include novel approaches to protein purification as well as improvements in cell and organ culture. The actual techniques are equally inclusive ranging from aptamers to zymology. The journal has been particularly active in: -Analytical techniques for biological molecules- Aptamer selection and utilization- Biosensors- Chromatography- Cloning, sequencing and mutagenesis- Electrochemical methods- Electrophoresis- Enzyme characterization methods- Immunological approaches- Mass spectrometry of proteins and nucleic acids- Metabolomics- Nano level techniques- Optical spectroscopy in all its forms. The journal is reluctant to include most drug and strictly clinical studies as there are more suitable publication platforms for these types of papers.
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