Lattice Models: Non-Conventional simulation methods for mechanobiology

IF 2.4 3区 医学 Q3 BIOPHYSICS Journal of biomechanics Pub Date : 2025-01-27 DOI:10.1016/j.jbiomech.2025.112555
Lorenzo Vaiani, Antonio Emmanuele Uva, Antonio Boccaccio
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Abstract

Computational methods represent a powerful tool to explore biophysical phenomena occurring at small scales and hence difficult to observe through experimental setups. In detail, they can provide a support to mechanobiology, with the aim of understanding the behavior of living cells interacting with the surrounding environment. To this end, lattice models can provide a simulation framework that is highly reliable and easy to implement, even for simulations involving large deformations and topological changes during time evolution. In this review article, elastic network models for studying biological molecules are described, several lattice spring models for investigating cell behaviors are discussed, and the adoption of lattice beam models for biomimetic structures design is presented. The lattice modelling approaches could be regarded as a valuable option to conduct in-silico experiments and consolidate the emergent mechanobiology research field.
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晶格模型:机械生物学的非常规模拟方法。
计算方法是探索在小尺度上发生的生物物理现象的有力工具,因此很难通过实验装置观察到。具体来说,它们可以为机械生物学提供支持,目的是了解活细胞与周围环境相互作用的行为。为此,晶格模型可以提供一个高度可靠且易于实现的仿真框架,即使对于在时间演化过程中涉及大变形和拓扑变化的仿真也是如此。本文介绍了用于研究生物分子的弹性网络模型,讨论了几种用于研究细胞行为的晶格弹簧模型,并介绍了采用晶格梁模型进行仿生结构设计。晶格建模方法可以被视为进行计算机实验和巩固新兴的机械生物学研究领域的一个有价值的选择。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of biomechanics
Journal of biomechanics 生物-工程:生物医学
CiteScore
5.10
自引率
4.20%
发文量
345
审稿时长
1 months
期刊介绍: The Journal of Biomechanics publishes reports of original and substantial findings using the principles of mechanics to explore biological problems. Analytical, as well as experimental papers may be submitted, and the journal accepts original articles, surveys and perspective articles (usually by Editorial invitation only), book reviews and letters to the Editor. The criteria for acceptance of manuscripts include excellence, novelty, significance, clarity, conciseness and interest to the readership. Papers published in the journal may cover a wide range of topics in biomechanics, including, but not limited to: -Fundamental Topics - Biomechanics of the musculoskeletal, cardiovascular, and respiratory systems, mechanics of hard and soft tissues, biofluid mechanics, mechanics of prostheses and implant-tissue interfaces, mechanics of cells. -Cardiovascular and Respiratory Biomechanics - Mechanics of blood-flow, air-flow, mechanics of the soft tissues, flow-tissue or flow-prosthesis interactions. -Cell Biomechanics - Biomechanic analyses of cells, membranes and sub-cellular structures; the relationship of the mechanical environment to cell and tissue response. -Dental Biomechanics - Design and analysis of dental tissues and prostheses, mechanics of chewing. -Functional Tissue Engineering - The role of biomechanical factors in engineered tissue replacements and regenerative medicine. -Injury Biomechanics - Mechanics of impact and trauma, dynamics of man-machine interaction. -Molecular Biomechanics - Mechanical analyses of biomolecules. -Orthopedic Biomechanics - Mechanics of fracture and fracture fixation, mechanics of implants and implant fixation, mechanics of bones and joints, wear of natural and artificial joints. -Rehabilitation Biomechanics - Analyses of gait, mechanics of prosthetics and orthotics. -Sports Biomechanics - Mechanical analyses of sports performance.
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