The complete chloroplast genome of Barringtonia asiatica (L.) Kurz (Lecythidaceae).

IF 0.7 4区 生物学 Q4 GENETICS & HEREDITY Mitochondrial DNA. Part B, Resources Pub Date : 2025-01-30 eCollection Date: 2025-01-01 DOI:10.1080/23802359.2025.2457456
Emmanuel Bonifacio S Timog, Renerio P Gentallan, Kristine Joyce O Quiñones, Michael Cedric B Bartolome, Daryl B Ceribo
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Abstract

Genomic resources for Barringtonia asiatica (L.) Kurz, a pantropical beach forest species native to the Philippines, have not been published to date, despite its medicinal importance and potential for biomedical applications. In this study, we assembled and characterized the first complete chloroplast genome of B. asiatica using Illumina paired-end sequencing technology. It displayed a typical quadripartite structure with a sequence length of 158,794 bp, comprised of a large single copy of 88,196 bp, small single-copy of 18,448 bp, and a pair of inverted repeat regions of 26,075 bp each. The cp genome contained 35 tRNA genes, eight rRNA genes, and 86 protein-coding genes with an overall GC content of 36.8%. Phylogenetic analysis revealed a close evolutionary relationship between B. racemosa and B. fusicarpa, forming a monophyletic group with B. asiatica with high bootstrap support, thereby enhancing our understanding of the phylogeny, systematics, and genetics of Asian Lecythidaceae species.

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亚洲Barringtonia asiatica (L.)叶绿体全基因组Kurz(玉蕊科)。
亚洲Barringtonia asiatica基因组资源Kurz是一种原产于菲律宾的泛热带海滩森林物种,尽管具有药用价值和生物医学应用潜力,但迄今尚未发表。本研究利用Illumina配对端测序技术,组装并鉴定了第一个完整的亚洲白桦叶绿体基因组。其序列长度为158,794 bp,由88,196 bp的大单拷贝、18,448 bp的小单拷贝和各26,075 bp的一对反向重复区组成。cp基因组包含35个tRNA基因、8个rRNA基因和86个蛋白质编码基因,总GC含量为36.8%。系统发育分析表明,总状芽孢杆菌与镰刀芽孢杆菌具有密切的进化关系,与亚洲芽孢杆菌形成了一个具有高度自举支持的单系类群,从而提高了我们对亚洲芽孢杆菌科物种系统发育、系统学和遗传学的认识。
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来源期刊
Mitochondrial DNA. Part B, Resources
Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
1.30
自引率
20.00%
发文量
670
期刊介绍: This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
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