{"title":"GraphOptima: A graph layout optimization framework for visualizing large networks","authors":"Anatoliy Gruzd, Jingwei Zhang, Philip Mai","doi":"10.1016/j.softx.2025.102034","DOIUrl":null,"url":null,"abstract":"<div><div>Graphs illustrating online networks, participants, and interactions have become essential tools for studying issues like misinformation, botnets, algorithmic filtering and many other areas of research. Researchers use these visual representations to examine underlying structures, form hypotheses, and share their findings. However, achieving visually appealing network visualizations often involves manually testing several layout algorithms and fine-tuning their parameters. Furthermore, due to the computational complexity of rendering large networks, there is also usually a long wait time between parameter tests. This paper introduces GraphOptima, a framework for optimizing graph layout and readability metrics. GraphOptima automates parameter selection, layout computation, and readability metric calculation. Rather than providing a single ‘optimal’ solution, the framework generates a range of solutions under different parameters, enabling researchers to explore multiple solutions based on multi-objective optimization. The framework supports parallel layout calculations without modifying the layout algorithm, efficiently managing computational resources in high-performance computing environments. In addition to introducing a new framework, the paper shows how GraphOptima can be used to explore distinct layouts for three sample networks and to decide on trade-offs among three readability metrics: crosslessness, normalized edge length variance, and min angle.</div></div>","PeriodicalId":21905,"journal":{"name":"SoftwareX","volume":"29 ","pages":"Article 102034"},"PeriodicalIF":2.4000,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"SoftwareX","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352711025000019","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, SOFTWARE ENGINEERING","Score":null,"Total":0}
引用次数: 0
Abstract
Graphs illustrating online networks, participants, and interactions have become essential tools for studying issues like misinformation, botnets, algorithmic filtering and many other areas of research. Researchers use these visual representations to examine underlying structures, form hypotheses, and share their findings. However, achieving visually appealing network visualizations often involves manually testing several layout algorithms and fine-tuning their parameters. Furthermore, due to the computational complexity of rendering large networks, there is also usually a long wait time between parameter tests. This paper introduces GraphOptima, a framework for optimizing graph layout and readability metrics. GraphOptima automates parameter selection, layout computation, and readability metric calculation. Rather than providing a single ‘optimal’ solution, the framework generates a range of solutions under different parameters, enabling researchers to explore multiple solutions based on multi-objective optimization. The framework supports parallel layout calculations without modifying the layout algorithm, efficiently managing computational resources in high-performance computing environments. In addition to introducing a new framework, the paper shows how GraphOptima can be used to explore distinct layouts for three sample networks and to decide on trade-offs among three readability metrics: crosslessness, normalized edge length variance, and min angle.
期刊介绍:
SoftwareX aims to acknowledge the impact of software on today''s research practice, and on new scientific discoveries in almost all research domains. SoftwareX also aims to stress the importance of the software developers who are, in part, responsible for this impact. To this end, SoftwareX aims to support publication of research software in such a way that: The software is given a stamp of scientific relevance, and provided with a peer-reviewed recognition of scientific impact; The software developers are given the credits they deserve; The software is citable, allowing traditional metrics of scientific excellence to apply; The academic career paths of software developers are supported rather than hindered; The software is publicly available for inspection, validation, and re-use. Above all, SoftwareX aims to inform researchers about software applications, tools and libraries with a (proven) potential to impact the process of scientific discovery in various domains. The journal is multidisciplinary and accepts submissions from within and across subject domains such as those represented within the broad thematic areas below: Mathematical and Physical Sciences; Environmental Sciences; Medical and Biological Sciences; Humanities, Arts and Social Sciences. Originating from these broad thematic areas, the journal also welcomes submissions of software that works in cross cutting thematic areas, such as citizen science, cybersecurity, digital economy, energy, global resource stewardship, health and wellbeing, etcetera. SoftwareX specifically aims to accept submissions representing domain-independent software that may impact more than one research domain.