Molecular dynamics study of functionalized carbon nanotube loaded with multiple doxorubicin targeted to folate receptor α

IF 3 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Journal of molecular graphics & modelling Pub Date : 2025-05-01 Epub Date: 2025-02-01 DOI:10.1016/j.jmgm.2025.108964
Cuihong Wang , Xin Gao , Yue Jiang , Meiling Zhang , Lijuan Liu , Shouchao Zhang , Dan Ye , Rongyun Jiang
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Abstract

Two novel targeted drug delivery systems (DDSs) were designed: folate (FOL) conjugated (9, 9) carbon nanotube (CNT) loaded with 20 doxorubicin (DOX) molecules (FOL-CNT/20DOX) and folate (FOL) conjugated carboxylated (9, 9) CNT (COOH-CNT) loaded with 24 doxorubicin (DOX) molecules (FOL-COOH-CNT/24DOX). The targeted property to folate receptor α (FRα) was calculated using molecular dynamics (MD) calculations. The structures of the FRα/FOL-CNT/20DOX and FRα/FOL-COOH-CNT/24DOX complexes were analyzed in detail. Radial distribution functions were calculated to analyze the distribution of DOX molecules around the CNTs in the complexes. The variation of representative distances and angles between novel DDSs and FRα, number of hydrogen bonds, and secondary structures of FRα during the MD simulations were studied to analyze the dynamic properties of the novel DDSs targeted to FRα. We further analyzed the root mean square displacement and root mean square fluctuation in detail. The results indicate that the two novel DDSs were very stable and well targeted with FRα, and FOL-COOH-CNT/24DOX had better targeting and stability than FOL-CNT/20DOX. This study is expected to provide insights for the design of efficient nano drug delivery systems with good FRα targeting and controllable drug loading dosage.

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叶酸受体α靶向多柔比星功能化碳纳米管的分子动力学研究
设计了两种新型靶向药物递送系统(dss):叶酸(FOL)偶联(9,9)碳纳米管(CNT)负载20个阿霉素(DOX)分子(foll -CNT/20DOX)和叶酸(FOL)偶联羧化(9,9)碳纳米管(COOH-CNT)负载24个阿霉素(DOX)分子(foll -COOH-CNT/24DOX)。利用分子动力学方法计算叶酸受体α (FRα)的靶向性。详细分析了FRα/ folo - cnt /20DOX和FRα/ folo - cooh - cnt /24DOX配合物的结构。计算径向分布函数来分析配合物中碳纳米管周围DOX分子的分布。在MD模拟过程中,研究了新型dds与FRα之间的代表距离和角度、FRα的氢键数和二级结构的变化,分析了新型dds针对FRα的动力学特性。进一步详细分析了均方根位移和均方根波动。结果表明,两种新型dds具有良好的靶向性和稳定性,其中folo - cooh - cnt /24DOX的靶向性和稳定性优于folo - cnt /20DOX。该研究有望为设计具有良好的FRα靶向性和可控制的载药量的高效纳米药物递送系统提供见解。
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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